Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F000825725.1_202014-12-08] 1,554 sequences; 49,238,270 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq71 107 2e-18 seq686 98.7 8e-16 seq769 96.9 3e-15 seq243 95.1 1e-14 >seq71 Length=102704 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||| || ||||||||||| ||| ||| | || || Sbjct 21498 ACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCACTCAAAGTACGACCATCCTCA 21557 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 |||||||| || || || || | | ||||||||| ||||| | ||| |||||||| | Sbjct 21558 AGTTGTTTACCAGCAAAGATAAGTCTCTGTTGGTCAGGAGGGATACCTTCCTTGTCTTGA 21617 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || |||||||| || | | || || | || || || | |||||||||||| Sbjct 21618 ATCTTTTGCTTGACATTTTCGATACTATCAGAAGATTCGACTTCTAAAGTAATCGTCTTG 21677 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 || || |||||||| || ||||||||||| || Sbjct 21678 CCGGTAAGAGTCTTTACGAAGATTTGCATTTT 21709 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||| || ||||||||||| ||| || | || || Sbjct 21270 ACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCACTCAAAGTACGGCCATCCTCA 21329 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| || | || |||||||| ||||| | ||| ||||| || Sbjct 21330 AGCTGCTTGCCGGCGAAAATGAGACGTTGTTGGTCAGGAGGAATACCTTCCTTATCTTGG 21389 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || |||||||| || | | || || ||| ||||||| |||||| ||||| Sbjct 21390 ATCTTTTGCTTGACATTTTCAATACTATCAGAGGACTCAACCTCCAAGGTAATGGTCTTA 21449 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || |||||||| |||||||||||||| Sbjct 21450 CCAGTGAGAGTCTTGACAAAGATTTGCAT 21478 >seq686 Length=24674 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || || || |||||||| || || ||| ||| |||| || Sbjct 10757 ACCAAGTGAAGAGTAGATTCTTTTTGAATGTTATAATCACTCAAAGTACGACCGTCTTCG 10698 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 |||||||| || ||||| || | || |||||||| ||||| | ||| ||||| || | Sbjct 10697 AGTTGTTTACCAGCGAAAATGAGACGTTGTTGGTCAGGAGGGATACCTTCCTTATCTTGA 10638 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || |||||||| || | | || || | || || || | ||||| |||||| Sbjct 10637 ATCTTTTGCTTGACATTTTCGATACTATCAGAAGATTCAACTTCTAAAGTAATTGTCTTG 10578 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 || || |||||||| || ||||||||||| || Sbjct 10577 CCGGTAAGAGTCTTTACGAAGATTTGCATTTT 10546 >seq769 Length=21522 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||| |||||||| |||||| | || ||| | || || Sbjct 14277 ACCAAGTGAAGAGTAGATTCCTTTTGAATGTTATAGTCGCTTAGGGTACGACCATCTTCG 14218 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 |||||||| || || || || | || ||||| || ||||| | ||| |||||||| | Sbjct 14217 AGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGAGGAATACCTTCCTTGTCTTGA 14158 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||||| || || | | |||| | || || || | ||||| ||||| Sbjct 14157 ATCTTTTGTTTTACATTGTCGATAGTGTCAGAAGATTCAACTTCTAAAGTAATTGTCTTT 14098 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 || || || ||||| ||||||||||||||| || Sbjct 14097 CCAGTAAGTGTCTTGACAAAGATTTGCATGATG 14065 >seq243 Length=56764 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || || ||||| || ||||| |||||| | || ||| | || || Sbjct 37869 ACCAAATGAAGAGTAGATTCCTTTTGGATGTTATAGTCGCTTAGGGTACGACCATCTTCG 37928 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 |||||||| || || || || | || ||||| || ||||| | ||| |||||||| | Sbjct 37929 AGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGAGGAATACCTTCCTTGTCTTGA 37988 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 |||||||| || || | | |||| | ||| || || | |||||| |||| Sbjct 37989 ATTTTTTGTTTTACATTGTCGATAGTGTCAGAAGACTCGACTTCTAAAGTAATCATCTTT 38048 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || ||||| ||||||||||||||| Sbjct 38049 CCAGTAAGTGTCTTGACAAAGATTTGCATG 38078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395067717522634