Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F000825725.1_202014-12-08] 1,554 sequences; 49,238,270 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq656 197 1e-45 seq862 187 2e-42 >seq656 Length=25916 Score = 197 bits (218), Expect = 1e-45 Identities = 547/835 (66%), Gaps = 8/835 (1%) Strand=Plus/Plus Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 |||||| ||| || | |||||||||||||| || || |||| || || || | || Sbjct 485 TTGATAGTCAGAGACACGCTTTTCAAAGAAGTTGGTCTTGCCTTGAAGAGAGATCATGTC 544 Query 13975 CATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 14034 |||||| ||||||||||| || | ||| | | || || | || || | | | | Sbjct 545 CATAAAGTCAAATGGATTGGTAGCCATGTAAATCTTGTCGAATCCAAGAGCAACCATAAG 604 Query 14035 TCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 14094 | ||| |||| ||| || || ||||| |||| || || ||||||| || || || Sbjct 605 GCGATCGGCAACGAATTCGATGTATTGGCACATCAAGGCAGAATTCATGCCGATGAGAGC 664 Query 14095 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT 14154 || |||| || || |||||||| | ||| || ||||| || || ||| Sbjct 665 AACGGGAAGAGCATCCGTCAAAAATTCCTGTTCAATGCTGACAGCTTCCAAGATGATATC 724 Query 14155 CGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATC 14214 | | | ||| | |||| | | ||||| |||| | | ||| ||||| || Sbjct 725 CTTGACGCGTTCTTGGCTAGGACGCTTACGAAGATGGGTAAATAAAAGACAAGCAAAGTC 784 Query 14215 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 14274 | ||||||||| ||||| | || || | ||| || ||||| || || |||||||| Sbjct 785 AGTATGAAGGCCTTCATCACGACAGATCAATTCATTGCTGAATGTCAAACCAGGCATCAA 844 Query 14275 TCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAAC 14334 || ||||| || | |||||| || | ||| || || || || ||||| || || || || Sbjct 845 ACCACGTTTCTTGAGCCAAAAAATAGAAGCAAAGGAACCAGAGAAGAAGATACCTTCGAC 904 Query 14335 TGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCT 14394 |||||||| || | | || || |||| || | || | || ||||| || Sbjct 905 AGCAGCAAAGGCAACAAGACGCTCAGCAAAAGAACCGTTAGAG---GAAATCCACTTGAA 961 Query 14395 AGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTTC 14454 ||||| |||| ||| |||| ||| | || || ||||||||| ||||| ||| Sbjct 962 GGCCCAATCAGCCTTTCTTTTGATACAGGGGATAGTGTCAATAGCAGAAAATAGCATTTC 1021 Query 14455 CTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTAT 14514 ||||||| | || | || || || ||||| | | || || |||| | ||| || Sbjct 1022 TTTCTCTTGATTATCTTTGATATAAGTGTCAATCAAAAGACTGTAAGTTTCTGCGTGAAT 1081 Query 14515 GTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG-ACCATTGTACCTCTG 14573 |||||| || || ||||| ||||| |||||| ||||||| | | ||| || || Sbjct 1082 GTTTTCAATCATGATTTGAAAGCCATAGAAACATTTAGCTTCAGGAATCTTG-ACTTCAT 1140 Query 14574 AGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCA 14633 |||| ||| |||| ||||||||||| || ||||| | | ||||| || |||| Sbjct 1141 CACAAAAGTTTTGAACCAAGTTTTCATTAACAATGCCATCTGAACCAGCAAAGAAGGCCA 1200 Query 14634 ATATGTTTTTAATAAAGTA---TTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAAT 14690 | | | |||||| | || | |||| | | |||| |||||| | | Sbjct 1201 AGACGCGAGAGATAAAGAAGCGTTCGTTTTCAGTCATCTTGTTTTCCCAATCATGAAGGT 1260 Query 14691 CCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATA 14745 |||| | ||| | ||| ||| |||||||||| ||| ||||||| ||||| Sbjct 1261 CCTTGCTCAAATCGATTTCTTCAGCTGTCCAAAAGGAAGCTTCAGCTTTCTTATA 1315 >seq862 Length=17893 Score = 187 bits (206), Expect = 2e-42 Identities = 547/837 (65%), Gaps = 12/837 (1%) Strand=Plus/Minus Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 |||||| ||| || | |||||||||||||| || || |||| || || || | || Sbjct 17778 TTGATAATCAGAGACACGCTTTTCAAAGAAGTTGGTCTTGCCTTGAAGAGAGATCATGTC 17719 Query 13975 CATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 14034 |||||| ||||||||||| || | ||| | | || || | || || | | | | Sbjct 17718 CATAAAGTCAAATGGATTGGTAGCCATGTAAATCTTGTCGAATCCAAGAGCAACCATGAG 17659 Query 14035 TCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 14094 | ||| |||| ||| || || || ||| |||| || || | ||||| || || || Sbjct 17658 ACGATCAGCAACGAATTCGATGTACTGACACATCAAGGCAGAGTTCATGCCGATGAGAGC 17599 Query 14095 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT 14154 || |||| || || |||||||||| ||| || ||||| || || ||| Sbjct 17598 GACGGGAAGAGCATCCGTCAAAAATTCTTGTTCAATGCTGACAGCTTCCAAGATGATATC 17539 Query 14155 CGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATC 14214 | | | ||| | |||| | | ||||| |||| | | ||| ||||| || Sbjct 17538 CTTGACGCGTTCTTGGCTAGGACGCTTACGAAGATGGGTAAATAAAAGACAAGCAAAGTC 17479 Query 14215 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 14274 | |||||| || ||||| | || || | ||| || ||||| || || ||||||| Sbjct 17478 AGTATGAAGACCTTCATCACGACAGATCAATTCATTGCTGAATGTCAAACCGGGCATCAG 17419 Query 14275 TCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAAC 14334 || |||||||| | |||||| || | ||| || || || || ||||| || || || || Sbjct 17418 ACCACGTTTTTTGAGCCAAAAGATGGAAGCAAAGGAACCAGAGAAGAAGATACCTTCGAC 17359 Query 14335 TGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCT 14394 |||||||| || | | ||||| |||| || | || | || |||||||| Sbjct 17358 AGCAGCAAAGGCAACAAGACGTTCAGCAAAAGAACCGTTAGAG---GAAATCCATTTGAA 17302 Query 14395 AGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTTC 14454 ||||| |||| ||| | || ||| || || || ||||||||| ||| | ||| Sbjct 17301 GGCCCAATCAGCCTTTCTCTTGATACAAGGGATAGTGTCAATAGCAGAAAAGAGCATTTC 17242 Query 14455 CTTCTCTT--TAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGT 14512 ||||||| | || |||| || | || ||||| | | || || |||| | ||| Sbjct 17241 TTTCTCTTGGTTGTCTTTGATAT--AAGTGTCAATCAAAAGACTGTAAGTTTCTGCGTGA 17184 Query 14513 ATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG-ACCATTGTACCTC 14571 || ||||| || || ||||| ||||| |||||| ||||||| | | ||| || || Sbjct 17183 ATATTTTCAATCATGATTTGAAAGCCATAGAAACATTTAGCTTCAGGAATCTTG-ACTTC 17125 Query 14572 TGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGC 14631 |||| ||| |||| ||||||||||| || ||||| | | ||||| || || Sbjct 17124 ATCACAAAAGTTTTGAACCAAGTTTTCATTAACAATGCCATCTGAACCAGCAAAGAAGGC 17065 Query 14632 CAATATGTTTTTAATAAAGTA---TTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAA 14688 ||| | | |||||| | || | ||| | | |||| |||||| | Sbjct 17064 CAAAACGCGAGAGATAAAGAAACGTTCGTTTTCGGTCATCTTGTTTTCCCAATCATGAAG 17005 Query 14689 ATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATA 14745 ||||| | ||| | ||| ||| |||||||||| ||| ||||||| ||||| Sbjct 17004 GTCCTTGCTCAAATCGATTTCTTCAGCTGTCCAAAAGGAAGCTTCAGCTTTCTTATA 16948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482336230436720