Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F000825725.1_202014-12-08] 1,554 sequences; 49,238,270 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq862 132 1e-25 seq656 132 1e-25 >seq862 Length=17893 Score = 132 bits (146), Expect = 1e-25 Identities = 306/459 (67%), Gaps = 3/459 (1%) Strand=Plus/Plus Query 101902 TTTGGCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATT 101961 ||| || |||| |||||||||||||||| || ||||| |||||||| |||| | || Sbjct 17328 TTTTGCTGAACGTCTTGTTGCCTTTGCTGCTGTCGAAGGTATCTTCTTCTCTGGTTCCTT 17387 Query 101962 CGCATCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGA 102021 || ||||| || ||| |||| || | ||| | |||| ||| | || | | |||||| Sbjct 17388 TGCTTCCATCTTTTGGCTCAAAAAACGTGGTCTGATGCCCGGTTTGACATTCAGCAATGA 17447 Query 102022 GTTCATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGG 102081 || || | | | || |||||||||||| |||||||| || | | || | | Sbjct 17448 ATTGATCTGTCGTGATGAAGGTCTTCATACTGACTTTGCTTGTCTTTTATTTACCCA--T 17505 Query 102082 TTTTGTTGATACCCCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAAT 102141 || || || | | | |||| | | || || || ||||| ||| | || Sbjct 17506 CTTCGTAAGCGTCCTAGCCA-AGAACGCGTCAAGGATATCATCTTGGAAGCTGTCAGCAT 17564 Query 102142 TGAACAAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTT 102201 ||||||||||||| | || | | | || || || | | || ||||||| || Sbjct 17565 TGAACAAGAATTTTTGACGGATGCTCTTCCCGTCGCTCTCATCGGCATGAACTCTGCCTT 17624 Query 102202 GATGAGCCAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAA 102261 |||| | |||||||| ||||| || || ||| || |||||| | ||| | || || Sbjct 17625 GATGTGTCAGTACATCGAATTCGTTGCTGATCGTCTCATGGTTGCTCTTGGATTCGACAA 17684 Query 102262 GCACTATAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGAC 102321 | || | | |||||| || || || ||||||| || || || | ||||| Sbjct 17685 GATTTACATGGCTACCAATCCATTTGACTTTATGGACATGATCTCTCTTCAAGGCAAGAC 17744 Query 102322 CAACTTTTTTGAAAAGAGAGTCGCCGAGTATCAACGTGC 102360 |||||| ||||||||| | ||| | || ||||||||||| Sbjct 17745 CAACTTCTTTGAAAAGCGTGTCTCTGATTATCAACGTGC 17783 >seq656 Length=25916 Score = 132 bits (146), Expect = 1e-25 Identities = 300/447 (67%), Gaps = 7/447 (2%) Strand=Plus/Minus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 |||||||||||||||| || ||||| |||||||| |||| | || || || ||||| | Sbjct 921 TTGTTGCCTTTGCTGCTGTCGAAGGTATCTTCTTCTCTGGTTCCTTTGCTTCTATTTTTT 862 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGG 102035 || ||||||| | ||| | |||||||| | || | | |||||| || || | | | | Sbjct 861 GGCTCAAGAAACGTGGTTTGATGCCTGGTTTGACATTCAGCAATGAATTGATCTGTCGTG 802 Query 102036 ACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCC 102095 | ||||| |||||| |||||||| || | | || | | || || || Sbjct 801 ATGAAGGCCTTCATACTGACTTTGCTTGTCTTTTATTTACCCA--TCTTCGTAAGCGTCC 744 Query 102096 CATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTC 102155 | | | |||| | | || || || ||||| ||| | |||||||| |||||| Sbjct 743 TAGCCA-AGAACGCGTCAAGGATATCATCTTGGAAGCTGTCAGCATTGAACAGGAATTTT 685 Query 102156 TCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAA--CTGCAAGTTGATGAGCCAGTA 102213 | || | | | || || ||| | | || ||||| |||| |||||| |||| || Sbjct 684 TGACGGATGCTCTTCCCGTTGCTCTCATCGGCATGAATTCTGC--CTTGATGTGCCAATA 627 Query 102214 CATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGT 102273 ||| ||||| || || ||| || |||||| | ||| | || ||| || | | Sbjct 626 CATCGAATTCGTTGCCGATCGCCTTATGGTTGCTCTTGGATTCGACAAGATTTACATGGC 567 Query 102274 TACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGA 102333 |||||| || || || ||||||| || || || | ||||||||||| ||||| Sbjct 566 TACCAATCCATTTGACTTTATGGACATGATCTCTCTTCAAGGCAAGACCAACTTCTTTGA 507 Query 102334 AAAGAGAGTCGCCGAGTATCAACGTGC 102360 |||| | ||| | || ||||||||||| Sbjct 506 AAAGCGTGTCTCTGACTATCAACGTGC 480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989564296764070