Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F000825725.1_202014-12-08] 1,554 sequences; 49,238,270 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq862 107 1e-18 seq656 93.3 3e-14 >seq862 Length=17893 Score = 107 bits (118), Expect = 1e-18 Identities = 368/558 (66%), Gaps = 27/558 (5%) Strand=Plus/Plus Query 22348 TACAAGAAGGCCGTTGCGTCTTTTTGGACCGTTGAGGAGGTGGATCTTAGTACTGATGTA 22407 || ||||| || | || || |||||||| | ||| || | ||| | || | || | Sbjct 16948 TATAAGAAAGCTGAAGCTTCCTTTTGGACAGCTGAAGAAATCGATTTGAGCAAGGACCTT 17007 Query 22408 CGCCATTGGACAGAAAAACTGACCGAGGCTGAGCGCAGGTTCATGTCTCACATACTGGCA 22467 | ||||| | | || ||||||| || || || || |||| | | |||| Sbjct 17008 CATGATTGGGAAAACAAGATGACCGAAAACGAACGTTTCTTTATCTCTCGCGTTTTGGCC 17067 Query 22468 TTCTTTGCAATGG--CAGATGGCATTGTAGGCGACAACCTTGTGTGCAA---TTTCGCAA 22522 |||||||| ||| ||||||||||||| || ||| ||| || ||| ||| | | Sbjct 17068 TTCTTTGC--TGGTTCAGATGGCATTGTTAATGAAAAC-TTG-GTTCAAAACTTTTGTGA 17123 Query 22523 AAGAACTTGACTATATTCCAGAAGCCAGAGCTTTCTATGGGTTTCAGGTGGCAATGGAAA 22582 ||| | | | ||||| ||||| | | ||||||||| ||||| | || |||| Sbjct 17124 T-GAAGT---CAAGATTCCTGAAGCTAAATGTTTCTATGGCTTTCAAATCATGATTGAAA 17179 Query 22583 ATATACATGCTGAAATGTATACTCAGCTGATTATCACATTAGTAGCTAAAGAGAATCAAG 22642 |||| || || |||| || | || ||||| ||| ||| || | ||||| || |||| Sbjct 17180 ATATTCACGCAGAAACTTACAGTCTTTTGATTGACAC-TTA-TATC-AAAGACAACCAAG 17236 Query 22643 CC---GCATTG---TTTTCAGCAGCTGAAGATATGCCATGTGTTAAAGCCAAGGCACAGT 22696 | | || ||||| || ||| ||| || ||| | || ||||| | | Sbjct 17237 AGAAAGAAATGCTCTTTTCTGCTATTGACACTATCCCTTGTATCAAGAGAAAGGCTGATT 17296 Query 22697 GGGC-TGCACAATGGCTGAATGCCACACATAAGTCTATCGCAACACGTCTCTTGGCCTTT 22755 |||| | || ||||| | | || | | ||| | || |||||| | |||||| Sbjct 17297 GGGCCTTCA-AATGGAT---TTCCTCTAACGGTTCTTTTGCTGAACGTCTTGTTGCCTTT 17352 Query 22756 GCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTGAAGAAA 22815 || ||||| ||||| || | || ||||| || ||||| |||| || ||||| || ||| Sbjct 17353 GCTGCTGTCGAAGGTATCTTCTTCTCTGGTTCCTTTGCTTCCATCTTTTGGCTCAAAAAA 17412 Query 22816 CGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAAGGTCTA 22875 ||| || ||||| || ||| | || ||| || ||||| | ||||| |||||||| Sbjct 17413 CGTGGTCTGATGCCCGGTTTGACATTCAGCAATGAATTGATCTGTCGTGATGAAGGTCTT 17472 Query 22876 CACTGTGACTTTGCTTGT 22893 || ||||||||||||| Sbjct 17473 CATACTGACTTTGCTTGT 17490 >seq656 Length=25916 Score = 93.3 bits (102), Expect = 3e-14 Identities = 365/558 (65%), Gaps = 27/558 (5%) Strand=Plus/Minus Query 22348 TACAAGAAGGCCGTTGCGTCTTTTTGGACCGTTGAGGAGGTGGATCTTAGTACTGATGTA 22407 || ||||| || | || || |||||||| | ||| || | ||| | || | || | Sbjct 1315 TATAAGAAAGCTGAAGCTTCCTTTTGGACAGCTGAAGAAATCGATTTGAGCAAGGACCTT 1256 Query 22408 CGCCATTGGACAGAAAAACTGACCGAGGCTGAGCGCAGGTTCATGTCTCACATACTGGCA 22467 | ||||| | | || |||| || || ||| || || |||| | | |||| Sbjct 1255 CATGATTGGGAAAACAAGATGACTGAAAACGAACGCTTCTTTATCTCTCGCGTCTTGGCC 1196 Query 22468 TTCTTTGCAATGG--CAGATGGCATTGTAGGCGACAACCTTGTGTGCAA---TTTCGCAA 22522 |||||||| ||| ||||||||||||| || ||| ||| || ||| ||| | | Sbjct 1195 TTCTTTGC--TGGTTCAGATGGCATTGTTAATGAAAAC-TTG-GTTCAAAACTTTTGTGA 1140 Query 22523 AAGAACTTGACTATATTCCAGAAGCCAGAGCTTTCTATGGGTTTCAGGTGGCAATGGAAA 22582 ||| | | | ||||| ||||| | | ||||||||| ||||| | || |||| Sbjct 1139 T-GAAGT---CAAGATTCCTGAAGCTAAATGTTTCTATGGCTTTCAAATCATGATTGAAA 1084 Query 22583 ATATACATGCTGAAATGTATACTCAGCTGATTATCACATTAGTAGCTAAAGAGAATCAAG 22642 | || || || |||| || | || ||||| ||| ||| || | ||||| ||||||| Sbjct 1083 ACATTCACGCAGAAACTTACAGTCTTTTGATTGACAC-TTA-TATC-AAAGATAATCAAG 1027 Query 22643 CC---GCATTG---TTTTCAGCAGCTGAAGATATGCCATGTGTTAAAGCCAAGGCACAGT 22696 | | || ||||| || ||| ||| || ||| | ||| ||||| | | Sbjct 1026 AGAAAGAAATGCTATTTTCTGCTATTGACACTATCCCCTGTATCAAAAGAAAGGCTGATT 967 Query 22697 GGGC-TGCACAATGGCTGAATGCCACACATAAGTCTATCGCAACACGTCTCTTGGCCTTT 22755 |||| | || | ||| | | || | | ||| | || ||||| | |||||| Sbjct 966 GGGCCTTCA-AGTGGAT---TTCCTCTAACGGTTCTTTTGCTGAGCGTCTTGTTGCCTTT 911 Query 22756 GCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTGAAGAAA 22815 || ||||| ||||| || | || ||||| || ||||| | || || ||||| |||||| Sbjct 910 GCTGCTGTCGAAGGTATCTTCTTCTCTGGTTCCTTTGCTTCTATTTTTTGGCTCAAGAAA 851 Query 22816 CGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAAGGTCTA 22875 ||| | ||||| || ||| | || ||| || ||||| | ||||| ||||| || Sbjct 850 CGTGGTTTGATGCCTGGTTTGACATTCAGCAATGAATTGATCTGTCGTGATGAAGGCCTT 791 Query 22876 CACTGTGACTTTGCTTGT 22893 || ||||||||||||| Sbjct 790 CATACTGACTTTGCTTGT 773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356226853158262