Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F000825725.1_202014-12-08] 1,554 sequences; 49,238,270 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq656 187 2e-42 seq862 179 4e-40 >seq656 Length=25916 Score = 187 bits (206), Expect = 2e-42 Identities = 547/837 (65%), Gaps = 12/837 (1%) Strand=Plus/Plus Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 |||||| ||| || | |||||||||||||| || || |||| || || || | || Sbjct 485 TTGATAGTCAGAGACACGCTTTTCAAAGAAGTTGGTCTTGCCTTGAAGAGAGATCATGTC 544 Query 13643 CATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 13702 |||||| ||||||||||| | | ||| | | || || | || || | | | | Sbjct 545 CATAAAGTCAAATGGATTGGTAGCCATGTAAATCTTGTCGAATCCAAGAGCAACCATAAG 604 Query 13703 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13762 | ||| |||| || || || ||||| |||| || || ||||||| || || || Sbjct 605 GCGATCGGCAACGAATTCGATGTATTGGCACATCAAGGCAGAATTCATGCCGATGAGAGC 664 Query 13763 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAAT 13822 || |||| || || |||||||| | ||| || ||||| || || ||| Sbjct 665 AACGGGAAGAGCATCCGTCAAAAATTCCTGTTCAATGCTGACAGCTTCCAAGATGATATC 724 Query 13823 TGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATC 13882 | | || | |||| | | ||||| |||| | | ||| ||||| || Sbjct 725 CTTGACGCGTTCTTGGCTAGGACGCTTACGAAGATGGGTAAATAAAAGACAAGCAAAGTC 784 Query 13883 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 13942 | ||||||||| ||||| | || || | ||| || ||||| || || |||||||| Sbjct 785 AGTATGAAGGCCTTCATCACGACAGATCAATTCATTGCTGAATGTCAAACCAGGCATCAA 844 Query 13943 TCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAAC 14002 || ||||| || | |||||| || | |||||| || || || ||||| || || || || Sbjct 845 ACCACGTTTCTTGAGCCAAAAAATAGAAGCAAAGGAACCAGAGAAGAAGATACCTTCGAC 904 Query 14003 TGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCT 14062 |||||||| || | | || || |||| || | || | || ||||| || Sbjct 905 AGCAGCAAAGGCAACAAGACGCTCAGCAAAAGAACCGTTAGAG---GAAATCCACTTGAA 961 Query 14063 AGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTC 14122 ||||| |||| ||| |||| ||| | || || ||||||||| ||||| ||| Sbjct 962 GGCCCAATCAGCCTTTCTTTTGATACAGGGGATAGTGTCAATAGCAGAAAATAGCATTTC 1021 Query 14123 CTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTAT 14182 ||||||| | || | || || || ||||| | | || || |||| | ||| || Sbjct 1022 TTTCTCTTGATTATCTTTGATATAAGTGTCAATCAAAAGACTGTAAGTTTCTGCGTGAAT 1081 Query 14183 GTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCG-ACCATTGTACTTCCG 14241 |||||| || || ||||| ||||| || ||| ||||||| | | ||| ||||| Sbjct 1082 GTTTTCAATCATGATTTGAAAGCCATAGAAACATTTAGCTTCAGGAATCTTG-ACTTCAT 1140 Query 14242 AGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCA 14301 |||| ||| |||| ||||||||||| || ||||| | | ||||| || |||| Sbjct 1141 CACAAAAGTTTTGAACCAAGTTTTCATTAACAATGCCATCTGAACCAGCAAAGAAGGCCA 1200 Query 14302 ATATGTTTTTAATAAAGTA---TTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAA- 14357 | | | |||||| | || | |||| | | |||| |||||| || || Sbjct 1201 AGACGCGAGAGATAAAGAAGCGTTCGTTTTCAGTCATCTTGTTTTCCCAATC--ATGAAG 1258 Query 14358 -TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATA 14413 ||||| | ||| | ||| ||| |||||||||| ||| ||||||| ||||| Sbjct 1259 GTCCTTGCTCAAATCGATTTCTTCAGCTGTCCAAAAGGAAGCTTCAGCTTTCTTATA 1315 >seq862 Length=17893 Score = 179 bits (198), Expect = 4e-40 Identities = 548/839 (65%), Gaps = 16/839 (2%) Strand=Plus/Minus Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 |||||| ||| || | |||||||||||||| || || |||| || || || | || Sbjct 17778 TTGATAATCAGAGACACGCTTTTCAAAGAAGTTGGTCTTGCCTTGAAGAGAGATCATGTC 17719 Query 13643 CATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 13702 |||||| ||||||||||| | | ||| | | || || | || || | | | | Sbjct 17718 CATAAAGTCAAATGGATTGGTAGCCATGTAAATCTTGTCGAATCCAAGAGCAACCATGAG 17659 Query 13703 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13762 | |||||||| || || || || ||| |||| || || | ||||| || || || Sbjct 17658 ACGATCAGCAACGAATTCGATGTACTGACACATCAAGGCAGAGTTCATGCCGATGAGAGC 17599 Query 13763 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAAT 13822 || |||| || || |||||||||| ||| || ||||| || || ||| Sbjct 17598 GACGGGAAGAGCATCCGTCAAAAATTCTTGTTCAATGCTGACAGCTTCCAAGATGATATC 17539 Query 13823 TGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATC 13882 | | || | |||| | | ||||| |||| | | ||| ||||| || Sbjct 17538 CTTGACGCGTTCTTGGCTAGGACGCTTACGAAGATGGGTAAATAAAAGACAAGCAAAGTC 17479 Query 13883 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 13942 | |||||| || ||||| | || || | ||| || ||||| || || ||||||| Sbjct 17478 AGTATGAAGACCTTCATCACGACAGATCAATTCATTGCTGAATGTCAAACCGGGCATCAG 17419 Query 13943 TCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAAC 14002 || |||||||| | |||||| || | |||||| || || || ||||| || || || || Sbjct 17418 ACCACGTTTTTTGAGCCAAAAGATGGAAGCAAAGGAACCAGAGAAGAAGATACCTTCGAC 17359 Query 14003 TGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCT 14062 |||||||| || | | ||||| |||| || | || | || |||||||| Sbjct 17358 AGCAGCAAAGGCAACAAGACGTTCAGCAAAAGAACCGTTAGAG---GAAATCCATTTGAA 17302 Query 14063 AGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTC 14122 ||||| |||| ||| | || ||| || || || ||||||||| ||| | ||| Sbjct 17301 GGCCCAATCAGCCTTTCTCTTGATACAAGGGATAGTGTCAATAGCAGAAAAGAGCATTTC 17242 Query 14123 CTTCTCTT--TAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGT 14180 ||||||| | || |||| || | || ||||| | | || || |||| | ||| Sbjct 17241 TTTCTCTTGGTTGTCTTTGATAT--AAGTGTCAATCAAAAGACTGTAAGTTTCTGCGTGA 17184 Query 14181 ATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCG-ACCATTGTACTTC 14239 || ||||| || || ||||| ||||| || ||| ||||||| | | ||| ||||| Sbjct 17183 ATATTTTCAATCATGATTTGAAAGCCATAGAAACATTTAGCTTCAGGAATCTTG-ACTTC 17125 Query 14240 CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGC 14299 |||| ||| |||| ||||||||||| || ||||| | | ||||| || || Sbjct 17124 ATCACAAAAGTTTTGAACCAAGTTTTCATTAACAATGCCATCTGAACCAGCAAAGAAGGC 17065 Query 14300 CAATATGTTTTTAATAAAGTA---TTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAA 14356 ||| | | |||||| | || | ||| | | |||| |||||| || | Sbjct 17064 CAAAACGCGAGAGATAAAGAAACGTTCGTTTTCGGTCATCTTGTTTTCCCAATC--ATGA 17007 Query 14357 A--TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATA 14413 | ||||| | ||| | ||| ||| |||||||||| ||| ||||||| ||||| Sbjct 17006 AGGTCCTTGCTCAAATCGATTTCTTCAGCTGTCCAAAAGGAAGCTTCAGCTTTCTTATA 16948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479718681283600