Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F000825725.1_202014-12-08] 1,554 sequences; 49,238,270 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq656 187 2e-42 seq862 178 1e-39 >seq656 Length=25916 Score = 187 bits (206), Expect = 2e-42 Identities = 547/836 (65%), Gaps = 10/836 (1%) Strand=Plus/Plus Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 |||||| ||| || | |||||||| ||||| || || |||| || || || | || Sbjct 485 TTGATAGTCAGAGACACGCTTTTCAAAGAAGTTGGTCTTGCCTTGAAGAGAGATCATGTC 544 Query 13431 CATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAA 13490 |||||| || |||||||| || | ||| | | || || | || || | || |||| Sbjct 545 CATAAAGTCAAATGGATTGGTAGCCATGTAAATCTTGTCGAATCCAAGAGC-AACCATAA 603 Query 13491 T-CTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTT 13549 | ||| |||| || || || ||||| |||| || || ||||||| || || || Sbjct 604 GGCGATCGGCAACGAATTCGATGTATTGGCACATCAAGGCAGAATTCATGCCGATGAGAG 663 Query 13550 TTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA 13609 || |||| || || |||||||| | ||| || ||||| || || ||| Sbjct 664 CAACGGGAAGAGCATCCGTCAAAAATTCCTGTTCAATGCTGACAGCTTCCAAGATGATAT 723 Query 13610 TCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAAT 13669 ||| | || | |||| | | ||||| |||| | | ||| ||||| | Sbjct 724 CCTTGACGCGTTCTTGGCTAGGACGCTTACGAAGATGGGTAAATAAAAGACAAGCAAAGT 783 Query 13670 CACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCA 13729 || ||||||||| ||||| | || || | ||| || ||||| || || ||||||| Sbjct 784 CAGTATGAAGGCCTTCATCACGACAGATCAATTCATTGCTGAATGTCAAACCAGGCATCA 843 Query 13730 ATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAA 13789 | || ||||| || | |||||| || | ||| || || || || ||||| || || || | Sbjct 844 AACCACGTTTCTTGAGCCAAAAAATAGAAGCAAAGGAACCAGAGAAGAAGATACCTTCGA 903 Query 13790 CTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTC 13849 | |||||||| || | || || || |||| || | || | || ||||| || Sbjct 904 CAGCAGCAAAGGCAACAAGACGCTCAGCAAAAGAACCGTTAGAG---GAAATCCACTTGA 960 Query 13850 TAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTT 13909 ||||| |||| ||| |||| ||| | || || || || ||| |||| || Sbjct 961 AGGCCCAATCAGCCTTTCTTTTGATACAGGGGATAGTGTCAATAGCAGAAAATAGCATTT 1020 Query 13910 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 13969 | ||||||| | || | || || || ||||| | | || || |||| | ||| | Sbjct 1021 CTTTCTCTTGATTATCTTTGATATAAGTGTCAATCAAAAGACTGTAAGTTTCTGCGTGAA 1080 Query 13970 TGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG-ACCATTGTACCTCC 14028 ||||||| || || ||||| ||||| |||||| ||||||| | | ||| || || Sbjct 1081 TGTTTTCAATCATGATTTGAAAGCCATAGAAACATTTAGCTTCAGGAATCTTG-ACTTCA 1139 Query 14029 GAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCC 14088 |||| ||| ||||||||||||||||||| ||||| | | ||||| || ||| Sbjct 1140 TCACAAAAGTTTTGAACCAAGTTTTCATTAACAATGCCATCTGAACCAGCAAAGAAGGCC 1199 Query 14089 AATATGTTTTTAATAAAGTA---TTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAA 14145 || | | |||||| | || | |||| | | |||| |||||| | Sbjct 1200 AAGACGCGAGAGATAAAGAAGCGTTCGTTTTCAGTCATCTTGTTTTCCCAATCATGAAGG 1259 Query 14146 TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATA 14201 ||||| | ||| | ||| ||| |||||||||| ||| ||||||| ||||| Sbjct 1260 TCCTTGCTCAAATCGATTTCTTCAGCTGTCCAAAAGGAAGCTTCAGCTTTCTTATA 1315 >seq862 Length=17893 Score = 178 bits (196), Expect = 1e-39 Identities = 545/837 (65%), Gaps = 12/837 (1%) Strand=Plus/Minus Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 |||||| ||| || | |||||||| ||||| || || |||| || || || | || Sbjct 17778 TTGATAATCAGAGACACGCTTTTCAAAGAAGTTGGTCTTGCCTTGAAGAGAGATCATGTC 17719 Query 13431 CATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAA 13490 |||||| || |||||||| || | ||| | | || || | || || | | | | Sbjct 17718 CATAAAGTCAAATGGATTGGTAGCCATGTAAATCTTGTCGAATCCAAGAGCAACCATGAG 17659 Query 13491 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13550 | |||||||| || || || || ||| |||| || || | ||||| || || || Sbjct 17658 ACGATCAGCAACGAATTCGATGTACTGACACATCAAGGCAGAGTTCATGCCGATGAGAGC 17599 Query 13551 TACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT 13610 || |||| || || |||||||||| ||| || ||||| || || ||| Sbjct 17598 GACGGGAAGAGCATCCGTCAAAAATTCTTGTTCAATGCTGACAGCTTCCAAGATGATATC 17539 Query 13611 CTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATC 13670 ||| | || | |||| | | ||||| |||| | | ||| ||||| || Sbjct 17538 CTTGACGCGTTCTTGGCTAGGACGCTTACGAAGATGGGTAAATAAAAGACAAGCAAAGTC 17479 Query 13671 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 13730 | |||||| || ||||| | || || | ||| || ||||| || || ||||||| Sbjct 17478 AGTATGAAGACCTTCATCACGACAGATCAATTCATTGCTGAATGTCAAACCGGGCATCAG 17419 Query 13731 TCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAAC 13790 || |||||||| | |||||| || | ||| || || || || ||||| || || || || Sbjct 17418 ACCACGTTTTTTGAGCCAAAAGATGGAAGCAAAGGAACCAGAGAAGAAGATACCTTCGAC 17359 Query 13791 TGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCT 13850 |||||||| || | || ||||| |||| || | || | || |||||||| Sbjct 17358 AGCAGCAAAGGCAACAAGACGTTCAGCAAAAGAACCGTTAGAG---GAAATCCATTTGAA 17302 Query 13851 AGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTC 13910 ||||| |||| ||| | || ||| || || || || || ||| || | ||| Sbjct 17301 GGCCCAATCAGCCTTTCTCTTGATACAAGGGATAGTGTCAATAGCAGAAAAGAGCATTTC 17242 Query 13911 CTTCTCTT--TAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGT 13968 ||||||| | || |||| || | || ||||| | | || || |||| | ||| Sbjct 17241 TTTCTCTTGGTTGTCTTTGATAT--AAGTGTCAATCAAAAGACTGTAAGTTTCTGCGTGA 17184 Query 13969 ATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG-ACCATTGTACCTC 14027 || ||||| || || ||||| ||||| |||||| ||||||| | | ||| || || Sbjct 17183 ATATTTTCAATCATGATTTGAAAGCCATAGAAACATTTAGCTTCAGGAATCTTG-ACTTC 17125 Query 14028 CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGC 14087 |||| ||| ||||||||||||||||||| ||||| | | ||||| || || Sbjct 17124 ATCACAAAAGTTTTGAACCAAGTTTTCATTAACAATGCCATCTGAACCAGCAAAGAAGGC 17065 Query 14088 CAATATGTTTTTAATAAAGTA---TTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAA 14144 ||| | | |||||| | || | ||| | | |||| |||||| | Sbjct 17064 CAAAACGCGAGAGATAAAGAAACGTTCGTTTTCGGTCATCTTGTTTTCCCAATCATGAAG 17005 Query 14145 ATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATA 14201 ||||| | ||| | ||| ||| |||||||||| ||| ||||||| ||||| Sbjct 17004 GTCCTTGCTCAAATCGATTTCTTCAGCTGTCCAAAAGGAAGCTTCAGCTTTCTTATA 16948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478579503412560