Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F000825725.1_202014-12-08] 1,554 sequences; 49,238,270 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq862 170 3e-37 seq656 154 2e-32 seq291 116 5e-21 seq815 109 8e-19 seq328 84.2 3e-11 >seq862 Length=17893 Score = 170 bits (188), Expect = 3e-37 Identities = 545/840 (65%), Gaps = 18/840 (2%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| || | || || || ||| | || ||||||||||| | ||||| ||||| || Sbjct 16936 ATCTGGCAATTCTATAAGAAAGCTGAAGCTTCCTTTTGGACAGCTGAAGAAATCGATTTG 16995 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||||||||| | |||||||| | |||| |||| || || ||||| || Sbjct 16996 AGCAAGGACCTTCATGATTGGGAAAACAAGATGACCGAAAACGAACGTTTCTTTATCTCT 17055 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 | | |||||||||||||||| || || ||||| || || || || || || | | Sbjct 17056 CGCGTTTTGGCCTTCTTTGCTGGTTCAGATGGCATTGTTAATGAAAACTTGGTTCAAAAC 17115 Query 125199 TTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATT 125258 || | | | || | | ||||| || | || || || || || |||||||||||| Sbjct 17116 TTTTGTGATGAAGTCAAGATTCCTGAAGCTAAATGTTTCTATGGCTTTCAAATCATGATT 17175 Query 125259 GAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAA 125318 || || | ||| | |||| ||| | ||||||||| || || || ||| Sbjct 17176 GAAAATATTCACGCAGAAACTTACAGTCTTTTGATTGACACTTATATCAAAGACAACCAA 17235 Query 125319 CGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAA 125378 ||| | ||||||||| || || ||||| | || | ||| | ||||||| | Sbjct 17236 GAGAAAGAAATGCTCTTTTCTGCTATTGACACTATCCCTTGTATCAAGAGAAAGGCTGAT 17295 Query 125379 TGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTC 125438 |||| | ||||| | | || ||| | || || | || || || || Sbjct 17296 TGGGCCTTCAAATGGAT---TTCCTCTAACGGTTCTTTTGCTGAACGTCTTGTTGCCTTT 17352 Query 125439 GCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAG 125498 || || || || || |||||||| || ||| ||||| |||||||||||||||| || Sbjct 17353 GCTGCTGTCGAAGGTATCTTCTTCTCTGGTTCCTTTGCTTCCATCTTTTGGCTCAAAAAA 17412 Query 125499 CGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTA 125558 || || || |||||||| |||| ||| || || || || | ||| || || || || Sbjct 17413 CGTGGTCTGATGCCCGGTTTGACATTCAGCAATGAATTGATCTGTCGTGATGAAGGTCTT 17472 Query 125559 CACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCC-AG 125617 || ||||||||| ||| | ||| | | |||| ||| || | ||| || Sbjct 17473 CATACTGACTTTGCTTGTCTTTTATTT---ACCCATCTTCGT---AAGCG----TCCTAG 17522 Query 125618 CGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAAC 125677 | | ||| |||| | || | || || || || || |||||||| ||| | || Sbjct 17523 CCAAGAACGCGTCAAGGATATCATCTTGGAAGCTGTCAGCATTGAACAAGAATTTTTGAC 17582 Query 125678 CGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGA 125737 || | || || ||| | || |||||||||| | ||||| ||||||| || Sbjct 17583 GGATGCTCTTCCCGTCGCTCTCATCGGCATGAACTCTGCCTTGATGTGTCAGTACATCGA 17642 Query 125738 GTTTGTGGCAGATCGTCTACTG--TACGAGTTGATTGGCCGCAAGATTTACAACGCCAAG 125795 || || || |||||||| || | | | |||| | ||||||||||| || | Sbjct 17643 ATTCGTTGCTGATCGTCTCATGGTTGCTCTTGGATT--CGACAAGATTTACATGGCTACC 17700 Query 125796 AATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 ||||| ||||| || ||| || || || || | || ||||||||||| || || ||| Sbjct 17701 AATCCATTTGACTTTATGGACATGATCTCTCTTCAAGGCAAGACCAACTTCTTTGAAAAG 17760 >seq656 Length=25916 Score = 154 bits (170), Expect = 2e-32 Identities = 544/842 (65%), Gaps = 22/842 (3%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| || | || || || ||| | || ||||||||||| | ||||| ||||| || Sbjct 1327 ATCTGGCAATTCTATAAGAAAGCTGAAGCTTCCTTTTGGACAGCTGAAGAAATCGATTTG 1268 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||||||||| | |||||||| | ||||||||| || || ||||| || Sbjct 1267 AGCAAGGACCTTCATGATTGGGAAAACAAGATGACTGAAAACGAACGCTTCTTTATCTCT 1208 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 | | | |||||||||||||| || || ||||| || || || || || || | | Sbjct 1207 CGCGTCTTGGCCTTCTTTGCTGGTTCAGATGGCATTGTTAATGAAAACTTGGTTCAAAAC 1148 Query 125199 TTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATT 125258 || | | | || | | ||||| || | || || || || || |||||||||||| Sbjct 1147 TTTTGTGATGAAGTCAAGATTCCTGAAGCTAAATGTTTCTATGGCTTTCAAATCATGATT 1088 Query 125259 GAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAA 125318 || ||| | ||| | |||| ||| | ||||||||| || || ||| ||| Sbjct 1087 GAAAACATTCACGCAGAAACTTACAGTCTTTTGATTGACACTTATATCAAAGATAATCAA 1028 Query 125319 CGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAA 125378 ||| | ||||| ||| || || ||||| | || | ||| | ||||||| | Sbjct 1027 GAGAAAGAAATGCTATTTTCTGCTATTGACACTATCCCCTGTATCAAAAGAAAGGCTGAT 968 Query 125379 TGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTC 125438 |||| | |||||| | | || ||| | || || | || || || || Sbjct 967 TGGGCCTTCAAGTGGAT---TTCCTCTAACGGTTCTTTTGCTGAGCGTCTTGTTGCCTTT 911 Query 125439 GCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAG 125498 || || || || || |||||||| || ||| ||||| | || |||||||||||||| Sbjct 910 GCTGCTGTCGAAGGTATCTTCTTCTCTGGTTCCTTTGCTTCTATTTTTTGGCTCAAGAAA 851 Query 125499 CGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTA 125558 || || | ||||| || |||| ||| || || || || | ||| || || ||||| Sbjct 850 CGTGGTTTGATGCCTGGTTTGACATTCAGCAATGAATTGATCTGTCGTGATGAAGGCCTT 791 Query 125559 CACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCC-AG 125617 || ||||||||| ||| | ||| | | |||| ||| || | ||| || Sbjct 790 CATACTGACTTTGCTTGTCTTTTATTT---ACCCATCTTCGT---AAGCG----TCCTAG 741 Query 125618 CGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAAC 125677 | | ||| |||| | || | || || || || || ||||| || ||| | || Sbjct 740 CCAAGAACGCGTCAAGGATATCATCTTGGAAGCTGTCAGCATTGAACAGGAATTTTTGAC 681 Query 125678 CGAATCCCTACCGGTCAGCATGATTGGCATGAA--CTGCAAGCTAATGTGCGAGTACATA 125735 || | || || || | || |||||||| |||| | |||||| | ||||| Sbjct 680 GGATGCTCTTCCCGTTGCTCTCATCGGCATGAATTCTGC--CTTGATGTGCCAATACATC 623 Query 125736 GAGTTTGTGGCAGATCGTCTACTG--TACGAGTTGATTGGCCGCAAGATTTACAACGCCA 125793 || || || || ||||| || || | | | |||| | ||||||||||| || | Sbjct 622 GAATTCGTTGCCGATCGCCTTATGGTTGCTCTTGGATT--CGACAAGATTTACATGGCTA 565 Query 125794 AGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGA 125853 ||||| ||||| || ||| || || || || | || ||||||||||| || || | Sbjct 564 CCAATCCATTTGACTTTATGGACATGATCTCTCTTCAAGGCAAGACCAACTTCTTTGAAA 505 Query 125854 AG 125855 || Sbjct 504 AG 503 >seq291 Length=50391 Score = 116 bits (128), Expect = 5e-21 Identities = 342/520 (66%), Gaps = 14/520 (3%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAAT--GTCAC 96864 || ||||| || ||| || || |||| |||||| | | | ||| |||| | | | Sbjct 27408 ACCAACGGTTACTCCAACGGATTATTGCCCATGCTCCGTGTTTTCAA--CAATACGGCTC 27465 Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924 | || || || ||||| ||||| || || ||||| | || | ||||||||||| | Sbjct 27466 GTTATGTCGATCAAGGCGGTAATAAGCGTCCGGGCGCATTCGCAATGTACTTGGAACCCT 27525 Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA- 96983 |||| || ||| |||| |||| | || |||| ||||||| ||| | |||| | | Sbjct 27526 GGCATGCAGACATTTTCACCTTTTTAGACTTGCGAAAAAACTTTGG---TAAAGACGAAA 27582 Query 96984 --CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCA 97041 |||| | || |||| ||||| |||||||| || ||| | |||||| |||| |||| Sbjct 27583 TCAGAGCTCGTGATCTGTTCTATGCTCTCTGGGTTCCTGATCTTTTCATGCAGCGTGTCA 27642 Query 97042 ACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCT 97101 |||||||| | ||| ||| | |||||| | | || || | || || Sbjct 27643 GAGACGGTGGTGATTGGTCTCTATTTTGCCCCAATGAAGCTCCTGGATTACATGAAGTCT 27702 Query 97102 GGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGA--TACGTGAG 97159 |||| || || |||| || || ||||| | || || || || | || Sbjct 27703 GGGGTGACGAATTTGTTGCTCTCTATGAAAAATACGAACGTGAAGGAAGAGGTA-GAGAA 27761 Query 97160 ACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAAC 97219 || | || | || | | | |||||| | ||||| || ||| || |||||||| | Sbjct 27762 AC-AATCAAGGCTCAAAAGCTGTGGTATGCCATTTTGGAGGCACAAACGGAGACTGGTAA 27820 Query 97220 TCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCAC 97279 ||| | ||| ||||| |||||| | || | || || || || | ||||||| || Sbjct 27821 TCCATTCATACTCTATAAGGATGCTTGTAACAGAAAGAGTAATCAGCAAAACTTGGGTAC 27880 Query 97280 CATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTAC 97319 |||||| || ||| ||||| || |||||||| || ||| Sbjct 27881 GATCAAGTGCAGCAACCTGTGTACAGAAATTGTTGAATAC 27920 >seq815 Length=19846 Score = 109 bits (120), Expect = 8e-19 Identities = 294/446 (66%), Gaps = 4/446 (1%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 || ||||| |||||||| || ||||| | || | ||||||||||| ||||| || ||| Sbjct 17152 CAAGGCGGTAATAAACGTCCGGGCGCATTCGCAATGTACTTGGAACCCTGGCATGCAGAC 17093 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 |||| |||| | || |||| ||||||| |||| || || |||| | || Sbjct 17092 ATTTTCACCTTTTTAGATTTGCGAAAAAACTTTGGCAAAGACGAAATCAGAGCTCGCGAT 17033 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 |||| ||||| |||||| | || ||| | |||||| |||| |||| ||||| || | Sbjct 17032 CTGTTCTATGCTCTCTGGATTCCTGATCTCTTCATGCAGCGTGTCAGAGACGGCGGTGAT 16973 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 ||| || | || ||| | | | || || | || |||||| || |||||| Sbjct 16972 TGGTCTCTGTTTTGTCCCAATGAGGCTCCTGGATTACATGAAATCTGGGGTGATGAGTTT 16913 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGA--TACGTGAGACGAGTCGATGCAC 97173 | || || ||||| | || || || || | || || | || | || | Sbjct 16912 GTTGCTCTCTATGAAAAATACGAACGTGAAGGAAGAGCTA-GAGAAAC-AATCAAGGCTC 16855 Query 97174 GAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233 | | |||||| | ||||| || ||||| ||||| || | ||||| ||| |||| Sbjct 16854 AAAAGCTGTGGTATGCCATTTTGGAAGCTCAAACGGAGACAGGTAATCCGTTCATACTCT 16795 Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293 | |||||| | || | || || || || | ||||||| || ||||| || || Sbjct 16794 ATAAGGATGCTTGTAACAGAAAGAGTAATCAGCAAAACTTGGGTACGATCAAATGCAGCA 16735 Query 97294 ATCTGTGCACGGAAATTGTAGAGTAC 97319 | ||||| || |||||||| || ||| Sbjct 16734 ACCTGTGTACAGAAATTGTTGAATAC 16709 >seq328 Length=46411 Score = 84.2 bits (92), Expect = 3e-11 Identities = 163/235 (69%), Gaps = 8/235 (3%) Strand=Plus/Plus Query 96806 AACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCAC 96864 ||||||||| | | ||| |||| | | |||||||||||| | | |||| || || | | Sbjct 23567 AACAAACGGTACCTCCAATGGCATCATTCCAATGCTCAGAGTCTTTAATGACACTG-CTC 23625 Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTA---TAGCCGTCTACTTGGAAC 96921 | | || ||||| || || |||||| || || || | || |||||| | |||| Sbjct 23626 GCTTTGTGACACAAGGAGGTGGTAAACG--CAA-CGGTAACTTTGCTGTCTACATAGAAC 23682 Query 96922 CTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGG 96981 ||||||| | ||||| || || || | || ||||||| ||| ||| ||| || Sbjct 23683 CTTGGCATGTCGACGTATTCGAATTCTTGGACTTGCGCAAGAACAATGGTGCTGAGGAAA 23742 Query 96982 CACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCG 97036 || || | |||||||| | | | | |||||||| ||| | ||||||||||| Sbjct 23743 TGCGCGCACGCGACTTGTTCTTGGGATTATGGGTGCCTGATCTTTTCATGAAGCG 23797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741044804925040