Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F000825725.1_202014-12-08] 1,554 sequences; 49,238,270 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq71 96.9 3e-15 seq686 84.2 2e-11 seq243 84.2 2e-11 >seq71 Length=102704 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 ||||| || || |||||||| ||||| |||||||| || | || ||| | ||| || Sbjct 21498 ACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCACTCAAAGTACGACCATCCTCA 21557 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | |||||| || ||| | ||||| |||||||| || || | ||||| ||||| | Sbjct 21558 AGTTGTTTACCAGCAAAGATAAGTCTCTGTTGGTCAGGAGGGATACCTTCCTTGTCTTGA 21617 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 || ||||| || || | | | | ||| || ||| ||| | ||||| || ||| Sbjct 21618 ATCTTTTGCTTGACATTTTCGATACTATCAGAAGATTCGACTTCTAAAGTAATCGTCTTG 21677 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCATTTTTAAA 20215 ||||| | || || || || |||||||||||| || Sbjct 21678 CCGGTAAGAGTCTTTACGAAGATTTGCATTTTTTAA 21713 >seq686 Length=24674 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 ||||| || || |||||||||||||| ||||| ||||| | || ||| | ||||| Sbjct 10757 ACCAAGTGAAGAGTAGATTCTTTTTGAATGTTATAATCACTCAAAGTACGACCGTCTTCG 10698 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | |||||| || || |||| || | ||||| || || | ||||| || || | Sbjct 10697 AGTTGTTTACCAGCGAAAATGAGACGTTGTTGGTCAGGAGGGATACCTTCCTTATCTTGA 10638 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 || ||||| || || | | | | ||| || ||| ||| | ||||| || ||| Sbjct 10637 ATCTTTTGCTTGACATTTTCGATACTATCAGAAGATTCAACTTCTAAAGTAATTGTCTTG 10578 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCATTTTTAAA 20215 ||||| | || || || || |||||||||||| || Sbjct 10577 CCGGTAAGAGTCTTTACGAAGATTTGCATTTTTTAA 10542 >seq243 Length=56764 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||||||| || |||||||| ||||| ||||| || |||| | || | |||||| Sbjct 37869 ACCAAATGAAGAGTAGATTCCTTTTGGATGTTATAGTCGCTTAGGGTACGACCATCTTCG 37928 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | |||||| || ||| | || || | |||||||| || | ||||| ||||| | Sbjct 37929 AGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGAGGAATACCTTCCTTGTCTTGA 37988 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 ||||||||||| || | | | | || || || || ||| | ||||| | || Sbjct 37989 ATTTTTTGTTTTACATTGTCGATAGTGTCAGAAGACTCGACTTCTAAAGTAATCATCTTT 38048 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || || | || |||||||| |||||||| Sbjct 38049 CCAGTAAGTGTCTTGACAAAGATTTGCAT 38077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419579253280674