Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F000825725.1_202014-12-08] 1,554 sequences; 49,238,270 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq862 145 7e-30 >seq862 Length=17893 Score = 145 bits (160), Expect = 7e-30 Identities = 466/715 (65%), Gaps = 16/715 (2%) Strand=Plus/Minus Query 12986 TCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTTACA 13045 |||||||| || || |||||||| ||| || || ||||||| || || | || Sbjct 17654 TCAGCAACGAATTCGATGTACTGACACATCAAGGCAGAGTTCATGCCGATGAGAGCGACG 17595 Query 13046 GGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTCTCTT 13105 || | ||| || || ||||| | || ||| || || ||||| | | || || ||| Sbjct 17594 GGAAGAGCATCCGTCAAAAATTCTTGTTCAATGCTGACAGCTTCCAAGATGATATC-CTT 17536 Query 13106 ATTACGTTCT---CTAATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAAATCA 13162 |||||| ||| ||| | || ||||| |||| | | ||| ||||| ||| Sbjct 17535 GACGCGTTCTTGGCTA--GGACGCTTACGAAGATGGGTAAATAAAAGACAAGCAAAGTCA 17478 Query 13163 CAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGC 13222 || | |||||||| | || || | || || ||||| | ||| ||||| || Sbjct 17477 GTATGAAGACCTTCATCACGACAGATCAATTCATTGCTGAATGTCAAACCGGGCATCAGA 17418 Query 13223 CCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACT 13282 || |||||||| | |||||| || | |||||| ||||| || || || || ||||| || Sbjct 17417 CCACGTTTTTTGAGCCAAAAGATGGAAGCAAAGGAACCAGAGAAGAAGATACCTTCGACA 17358 Query 13283 GCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCACTTTCTG 13342 || ||||| || | | | |||| || | | || || | ||||| || | Sbjct 17357 GCAGCAAAGGCAACAAGACGTTCAGCAAAAGAACCGTT---AGAGGAAATCCATTTGAAG 17301 Query 13343 GCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAttt 13402 ||||| | || ||| || | || ||| | || || || ||| | |||| Sbjct 17300 GCCCAATCAGCCTTTCTCTTGATACAAGGGATAGTGTCAATAGCAGAAAAGAGC--ATTT 17243 Query 13403 ttttC-CTTACT-GTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAA 13460 |||| ||| | |||| |||||||| || ||||| | || || |||||| |||| Sbjct 17242 CTTTCTCTTGGTTGTCTTTGATATAAGTGTCAATCAAAAGACTGTAAGTTTCTGCGTGAA 17183 Query 13461 TATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGG 13520 ||||||| ||| ||||| || ||||| |||||| |||| || | | || ||||| Sbjct 17182 TATTTTCAATCATGATTTGAAAGCCATAGAAACATTTAGCTTCAGGAATCTTGACTTCAT 17123 Query 13521 AGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAA 13580 |||| ||| | |||||||| ||||| || || || | ||||||| || || | Sbjct 17122 CACAAAAGTTTTGAACCAAGTTTTCATTAACAATGCCATCTGAACCAGCAAAGAAGGCCA 17063 Query 13581 GTATGTGCTTAATAAAttttttttCGTTTTCTGACAAC---TTTAACCAATCTGGAAAAT 13637 | | | ||||| ||||||||| | || | ||| |||||| ||| | Sbjct 17062 AAACGCGAGAGATAAAGAAACGTTCGTTTTCGGTCATCTTGTTTTCCCAATCATGAAGGT 17003 Query 13638 CTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATA 13692 | || ||||| | || ||| | |||||||| ||||| |||| |||||||| Sbjct 17002 CCTTGCTCAAATCGATTTCTTCAGCTGTCCAAAAGGAAGCTTCAGCTTTCTTATA 16948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430974237462708