Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F000825725.1_202014-12-08] 1,554 sequences; 49,238,270 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq862 188 2e-42 seq656 187 6e-42 seq769 161 2e-34 seq686 158 3e-33 seq243 145 2e-29 seq71 107 4e-18 seq439 98.7 2e-15 seq175 98.7 2e-15 >seq862 Length=17893 Score = 188 bits (208), Expect = 2e-42 Identities = 317/456 (70%), Gaps = 2/456 (0%) Strand=Plus/Plus Query 268841 TTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTA 268900 ||||| ||| || | || || ||||| | | ||||| || ||||| ||||| | Sbjct 17047 TTTATCTCTCGCGTTTTGGCCTTCTTTGCTGGTTCAGATGGCATTGTTAATGAAAACTTG 17106 Query 268901 GTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAG 268960 || | || || ||| | || || ||||||||||||| | |||||| || || || || Sbjct 17107 GTTCAAAACTTTTGTGATGAAGTCAAGATTCCTGAAGCTAAATGTTTCTATGGCTTTCAA 17166 Query 268961 ATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGAT 269020 || || ||||||||||| |||| | |||||||| || || || |||||||| | Sbjct 17167 ATCATGATTGAAAATATTCACGCAGAAACTTACAGTCTTTTGATTGACACTTATATCAAA 17226 Query 269021 GATAACAACGA-AAAGAAAAGACTATTTTCTTCTATGAGAACTATGGACTGTGTGAGaaa 269079 || ||| | || ||||||| | || |||||| |||| ||||| ||| | | | Sbjct 17227 GACAACCAAGAGAAAGAAATG-CTCTTTTCTGCTATTGACACTATCCCTTGTATCAAGAG 17285 Query 269080 aaaaTCTGAATGGGCTCTGAAATGGATAAACGATAGCGCGCCTTACGGAGAAAGGTTAGT 269139 ||| |||| ||||| | |||||||| | || || ||| | ||| | | || Sbjct 17286 AAAGGCTGATTGGGCCTTCAAATGGATTTCCTCTAACGGTTCTTTTGCTGAACGTCTTGT 17345 Query 269140 TGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTT 269199 ||| ||||| ||||| |||||||| ||||| || || || ||||| | ||||||||| | Sbjct 17346 TGCCTTTGCTGCTGTCGAAGGTATCTTCTTCTCTGGTTCCTTTGCTTCCATCTTTTGGCT 17405 Query 269200 GAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGA 269259 || ||| | || || ||||| || || || ||| || |||||||| | | || || Sbjct 17406 CAAAAAACGTGGTCTGATGCCCGGTTTGACATTCAGCAATGAATTGATCTGTCGTGATGA 17465 Query 269260 AGGTTTACACTGCGACTTCGCTTGTTTATTATTTAC 269295 |||| | || ||||| |||||| | |||||||| Sbjct 17466 AGGTCTTCATACTGACTTTGCTTGTCTTTTATTTAC 17501 >seq656 Length=25916 Score = 187 bits (206), Expect = 6e-42 Identities = 312/445 (70%), Gaps = 7/445 (2%) Strand=Plus/Minus Query 268855 TCTTG-CGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCT 268913 ||||| | || ||||| | | ||||| || ||||| ||||| | || | || || | Sbjct 1203 TCTTGGCCTTCTTTGCTGGTTCAGATGGCATTGTTAATGAAAACTTGGTTCAAAACTTTT 1144 Query 268914 GTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAA 268973 || | || || ||||||||||||| | |||||| || || || || || || |||| Sbjct 1143 GTGATGAAGTCAAGATTCCTGAAGCTAAATGTTTCTATGGCTTTCAAATCATGATTGAAA 1084 Query 268974 ATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAA-CAACGAA 269032 | ||||| |||| | |||||||| || || || |||||||| | ||||| ||| | Sbjct 1083 ACATTCACGCAGAAACTTACAGTCTTTTGATTGACACTTATATCAAAGATAATCAAGAGA 1024 Query 269033 AAGAAAAGACTATTTTCTTCTATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGG 269092 |||||| | ||||||||| |||| ||||| |||| | | || ||| |||| ||| Sbjct 1023 AAGAAATG-CTATTTTCTGCTATTGACACTATCCCCTGTATCAAAAGAAAGGCTGATTGG 965 Query 269093 GCTCTGAAATGGATAAACGATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCT 269152 || | || ||||| | || || ||| | || | | ||||| ||||| ||| Sbjct 964 GCCTTCAAGTGGATTTCCTCTAACGGTTCTTTTGCTGAGCGTCTTGTTGCCTTTGCTGCT 905 Query 269153 GTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGC 269212 || |||||||| ||||| || || || ||||| |||| |||||| | |||||| | || Sbjct 904 GTCGAAGGTATCTTCTTCTCTGGTTCCTTTGCTTCTATTTTTTGGCTCAAGAAACGTGGT 845 Query 269213 CTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGG--TTTACACT 269270 | ||||| || || || ||| || |||||||| | | || ||||| || | ||| Sbjct 844 TTGATGCCTGGTTTGACATTCAGCAATGAATTGATCTGTCGTGATGAAGGCCTTCATACT 785 Query 269271 GCGACTTCGCTTGTTTATTATTTAC 269295 ||||| |||||| | |||||||| Sbjct 784 --GACTTTGCTTGTCTTTTATTTAC 762 >seq769 Length=21522 Score = 161 bits (178), Expect = 2e-34 Identities = 154/197 (78%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| || ||||| |||||||| ||| || | ||| ||||| |||||||| ||| Sbjct 14265 GTAGATTCCTTTTGAATGTTATAGTCGCTTAGGGTACGACCATCTTCGAGTTGTTTACCA 14206 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | |||||||||||||| || ||||| || || ||||||||| |||| Sbjct 14205 GCAAAGATGAGACGTTGTTGATCAGGAGGAATACCTTCCTTGTCTTGAATCTTTTGTTTT 14146 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | || || || ||| || |||| ||||| ||||| ||||||||||| Sbjct 14145 ACATTGTCGATAGTGTCAGAAGATTCAACTTCTAAAGTAATTGTCTTTCCAGTAAGTGTC 14086 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 14085 TTGACAAAGATTTGCAT 14069 >seq686 Length=24674 Score = 158 bits (174), Expect = 3e-33 Identities = 155/200 (78%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||||||||| ||||| ||||| ||| | ||| | ||||||||| |||||||| ||| Sbjct 10745 GTAGATTCTTTTTGAATGTTATAATCACTCAAAGTACGACCGTCTTCGAGTTGTTTACCA 10686 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || | ||||| |||||||| || ||||| ||||| ||||||||| || Sbjct 10685 GCGAAAATGAGACGTTGTTGGTCAGGAGGGATACCTTCCTTATCTTGAATCTTTTGCTTG 10626 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | |||| || ||| || |||| ||||| ||||| || ||||| || Sbjct 10625 ACATTTTCGATACTATCAGAAGATTCAACTTCTAAAGTAATTGTCTTGCCGGTAAGAGTC 10566 Query 104543 TTTACAAATATCTGCATTTT 104562 ||||| || || |||||||| Sbjct 10565 TTTACGAAGATTTGCATTTT 10546 >seq243 Length=56764 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || | ||| | |||||||| || || || |||||||| ||| || | ||| || Sbjct 37865 AAGGACCAAATGAAGAGTAGATTCCTTTTGGATGTTATAGTCGCTTAGGGTACGACCATC 37924 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| |||||||| |||||||| || || | |||||||||||||| || ||||| || || Sbjct 37925 TTCGAGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGAGGAATACCTTCCTTGTC 37984 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||| ||| ||||||||| || | || || || || || |||| ||||| | Sbjct 37985 TTGAATTTTTTGTTTTACATTGTCGATAGTGTCAGAAGACTCGACTTCTAAAGTAATCAT 38044 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| ||||||||||| || ||||| || ||||| Sbjct 38045 CTTTCCAGTAAGTGTCTTGACAAAGATTTGCAT 38077 >seq71 Length=102704 Score = 107 bits (118), Expect = 4e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| || || || || |||||| | ||| | || || || || || || || Sbjct 21282 GTAGATTCCTTTTGGATGTTGTAGTCACTCAAAGTACGGCCATCCTCAAGCTGCTTGCCG 21341 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || | ||||| |||||||| || ||||| ||||| || |||||| || Sbjct 21342 GCGAAAATGAGACGTTGTTGGTCAGGAGGAATACCTTCCTTATCTTGGATCTTTTGCTTG 21401 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | |||| | || ||||| | ||||| ||||||||||| || || Sbjct 21402 ACATTTTCAATACTATCAGAGGACTCAACCTCCAAGGTAATGGTCTTACCAGTGAGAGTC 21461 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 21462 TTGACAAAGATTTGCAT 21478 >seq439 Length=37054 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| || ||||| || || ||| | || | ||||||||| |||||||| || Sbjct 23570 GTAGATTCCTTTTGAATGTTGTAATCACTCAAGGTACGACCGTCTTCGAGTTGTTTACCG 23511 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || | |||||||||||||| || ||||| ||||| || |||||| || Sbjct 23510 GCGAAAATGAGACGTTGTTGATCAGGAGGGATACCTTCCTTATCTTGGATCTTTTGCTTG 23451 Query 104483 ACATTTTCTACGGTATC 104499 ||||| || | ||| || Sbjct 23450 ACATTGTCAATGGTGTC 23434 >seq175 Length=68572 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| || ||||| || || ||| | || | ||||||||| |||||||| || Sbjct 14520 GTAGATTCCTTTTGAATGTTGTAATCACTCAAGGTACGACCGTCTTCGAGTTGTTTACCG 14461 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || | |||||||||||||| || ||||| ||||| || |||||| || Sbjct 14460 GCGAAAATGAGACGTTGTTGATCAGGAGGGATACCTTCCTTATCTTGGATCTTTTGCTTG 14401 Query 104483 ACATTTTCTACGGTATC 104499 ||||| || | ||| || Sbjct 14400 ACATTGTCAATGGTGTC 14384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151375474938232