Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F000825725.1_202014-12-08] 1,554 sequences; 49,238,270 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq453 145 9e-30 seq49 122 1e-22 seq176 95.1 1e-14 >seq453 Length=36563 Score = 145 bits (160), Expect = 9e-30 Identities = 457/692 (66%), Gaps = 51/692 (7%) Strand=Plus/Minus Query 6703 TGAGGATTATAAT---CTAACAATTCAAAATCTTCAAATTTAAAATCACATAAATTATCA 6759 |||||||| || | |||||| ||||||||||||| || |||||| | | |||| Sbjct 19660 TGAGGATTGTAGTTCTCTAACA---CAAAATCTTCAAACTTGAAATCATCGATAGTATCT 19604 Query 6760 GACtttttttttAATATTACAAC-AGGTGAAGGTTTTATTGATCGAGTT-AAT-TGTTCT 6816 ||||| || || || || ||| |||| || | || ||| ||| |||| Sbjct 19603 -ACTTTACGGTTGATTTTTAAAGTAGGGAAAGGCTTGGGT--TCACGTTGAATCTGTTGC 19547 Query 6817 TTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAATAAATTCA 6876 || | || | | |||||| | ||||| ||| | ||| || | ||||| || |||||| Sbjct 19546 TTAAGTGCGTCAAGATGATCCACATAAACATGTGTATCGCCCATTGTATGTATGAATTCA 19487 Query 6877 CCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGAAGCTACA 6936 || || | | ||| | || ||||| | ||| || | ||||||||| || | | Sbjct 19486 CCAGGATCAAGATCTGTTACATGCGCAATCATGCGTGTCAAAAGTGCATAAGAGGCAATA 19427 Query 6937 TTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGACAAGATAAAAT- 6995 || ||||| ||||| | ||||||||| || | ||||||| |||||| || | Sbjct 19426 TTGAAAGGAACACCCAGTCCCATATCACAAGAACGTTGATAAAGCACACAAGACAACTTG 19367 Query 6996 -----------ATT-----GTCTAT-AG---CATAAAATTGACACAATACATGACATGGA 7035 || || || || ||||||||||||| || ||||||| || Sbjct 19366 GCACGTCCGCCATCCTGAGGTGGATTAGATACATAAAATTGACAAAAGGCATGACAAGGC 19307 Query 7036 GGTAAAACAGCCTGATCT--ATATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTAT 7093 |||||| | | |||| ||||| | || ||||| || | || | || | | || Sbjct 19306 GGTAAAGC--CATGATAGGAATATCTGCAGGGTTCCATGCTGACAGAATGATTCTGCGAT 19249 Query 7094 CATTTGGATTTGTTTTTAATTTTGTT-ATAATTATTTGTAATTGATCTATACCCTGACCT 7152 || | ||||| |||||| || ||| || | | |||||||||||| || || || ||| Sbjct 19248 CAGTAGGATT-GTTTTTTATAGTGTCGATCACTTGTTGTAATTGATCAATGCCTTGCCCT 19190 Query 7153 TCATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAA 7212 ||||| ||||| ||||| | || || || ||||| |||||||||||||| || || Sbjct 19189 GTATAATCAGTATCACAATCAACGTATTTGGCACCAAAGTGTCTCCATTGAAATCCGTAG 19130 Query 7213 ATAGGACCTAAATCACCTTCTTCACGATGATTAAATCCTAA----TCGATTTAAATTAGA 7268 | || || | ||||||||| ||| ||| |||| ||||| |||| | ||| | Sbjct 19129 ACTGGTCCAAGATCACCTTCACGACGGTGAGTAAAACCTAACTTGTCGA--GATATTCG- 19073 Query 7269 TTTTGATCCATAAGCATCCCAAATATGTACAGAtttttttGA--TAAATTTAAAGAATTT 7326 || || | |||||||||| | || |||| ||| | || || || ||| Sbjct 19072 -CGAGAACCGTTGCCATCCCAAATCTTGAC--ATTTCTTTCACTTAGATGCTTTGAGTTT 19016 Query 7327 GTAGATCCTTTAAGGAACCATAAAAGTTCTTC 7358 ||| |||||||| |||||| | |||||||| Sbjct 19015 GTATCTCCTTTAATGAACCAAAGCAGTTCTTC 18984 >seq49 Length=122128 Score = 122 bits (134), Expect = 1e-22 Identities = 364/553 (66%), Gaps = 33/553 (6%) Strand=Plus/Minus Query 6721 AATTCAAAATCTTCAAATTTAAAATCACATAAATTATCAGACtttttttttAATATTACA 6780 ||| ||||||||||||| || |||||| | | |||| ||||| || || || | Sbjct 120626 AATACAAAATCTTCAAACTTGAAATCATCGATAGTATCT-ACTTTACGGTTGATTTTTAA 120568 Query 6781 AC-AGGTGAAGGTTTTATTGATCGAGTTAAT--TGTTCTTTTATAGCTTTTATATGATCT 6837 | ||| ||||||| | || ||| | |||| || | || | | |||||| Sbjct 120567 AGTAGGGAAAGGTTTGGGT--TCACGTTGAACCTGTTGCTTGAGTGCGTCAAGATGATCC 120510 Query 6838 AAATAAATATGAGCATCTCCTAGCGTATGAATAAATTCACCTGGTTTCATATCAACAGCT 6897 | ||||| ||| | ||| || | ||||| || |||||||| || | | ||| | Sbjct 120509 ACATAAACATGTGTATCGCCCATTGTATGTATGAATTCACCAGGATCAAGATCTGTTACA 120450 Query 6898 TGAGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAGGTACACCTAATCCC 6957 || ||||| | ||| || | |||||||||||| | ||| ||||| ||||| | ||| Sbjct 120449 TGCGCAATCATGCGTGTCAAAAGTGCATAAGAAGCAATATTGAAAGGAACACCCAGCCCC 120390 Query 6958 ATATCTGCTGATCTTTGATAACATTGACAAGATAAAAT------------ATT-----GT 7000 ||||| || | |||||| ||||||||| | || || Sbjct 120389 ATATCACAAGAACGTTGATAGAGCACACAAGATAACTTGGCACGTCCGCCATCCTGCGGT 120330 Query 7001 CTAT-AG---CATAAAATTGACACAATACATGACATGGAGGTAAAACAGCCTGATCT--A 7054 || || ||||||||||||| || ||||||| || |||||| | | |||| | Sbjct 120329 GGATTAGATACATAAAATTGACAAAAGGCATGACAAGGTGGTAAAGC--CATGATAGGAA 120272 Query 7055 TATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATT 7114 |||| | || ||||| || | | | || | | |||| | ||||| |||||| || Sbjct 120271 TATCTGCAGGGTTCCATGCTGATAGAATGATTCTGCGATCAGTGGGATT-GTTTTTTATA 120213 Query 7115 TTGTTA-TAATTATTTGTAATTGATCTATACCCTGACCTTCATAATTAGTATGACAATTT 7173 ||| | | | | |||||||||||| || || || ||| ||||| ||||| ||||| Sbjct 120212 GTGTCAATCACTTGTTGTAATTGATCAATGCCTTGTCCTGTATAATCAGTATCACAATCA 120153 Query 7174 ATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCT 7233 | || || || ||||| |||||||||||||| || || | || || | ||| ||||| Sbjct 120152 ACGTATTTGGCACCAAAGTGTCTCCATTGAAATCCGTAGACTGGTCCAAGATCGCCTTCA 120093 Query 7234 TCACGATGATTAA 7246 ||| ||| ||| Sbjct 120092 CGACGGTGAGTAA 120080 >seq176 Length=68518 Score = 95.1 bits (104), Expect = 1e-14 Identities = 126/175 (72%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 164815 AAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCT 164874 || || |||||||| ||| | ||||||||||| || | |||||||| ||| || Sbjct 67373 AAGATGGATGGTGTCGAACAACTCAATAATATTTTGATCATTGGTATGACGAACAGAAAG 67432 Query 164875 GATTTAATTGATGATGCTTTATTACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGA 164934 ||| | || ||||| || | || || ||||| || || ||| || | || ||||| || Sbjct 67433 GATATGATCGATGAAGCCCTTTTGCGTCCTGGCCGTTTGGAAGTGCATATGGAAATTGGT 67492 Query 164935 TTACCCGACAAAGAAGGACGCCTTCAAATTTTAAAAGTTCATGTGGCTAAAATGA 164989 ||||| || ||| ||| || ||||| || ||||| ||||| ||||||||| Sbjct 67493 TTACCTGATGAAGCAGGTCGTCTTCAGATCTTAAAGATTCATACATCTAAAATGA 67547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595860425186400