Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F000825725.1_202014-12-08] 1,554 sequences; 49,238,270 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq769 134 1e-26 seq243 134 1e-26 seq71 111 1e-19 seq80 98.7 9e-16 >seq769 Length=21522 Score = 134 bits (148), Expect = 1e-26 Identities = 158/212 (75%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 |||||||| | ||||||||||||||| | |||||| ||||| ||| || || ||| | Sbjct 14277 ACCAAGTGAAGAGTAGATTCCTTTTGAATGTTATAGTCGCT--TAGGGTACGACCATCTT 14220 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 | || ||||| || ||||||| | | ||| ||||| |||||||||||||| ||||| | Sbjct 14219 CGAGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGAGGAATACCTTCCTTGTCTT 14160 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 ||| ||| || || | ||| |||||||| || || || | || || || | Sbjct 14159 GAATCTTTTGTTTTACATTGTCGATAGTGTCAGAAGATTCAACTTCTAAAGTAATTGTCT 14100 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 |||||||||| || || |||||||| |||||| Sbjct 14099 TTCCAGTAAGTGTCTTGACAAAGATTTGCATG 14068 >seq243 Length=56764 Score = 134 bits (148), Expect = 1e-26 Identities = 158/212 (75%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 ||||| || | ||||||||||||||| | |||||| ||||| ||| || || ||| | Sbjct 37869 ACCAAATGAAGAGTAGATTCCTTTTGGATGTTATAGTCGCT--TAGGGTACGACCATCTT 37926 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 | || ||||| || ||||||| | | ||| ||||| |||||||||||||| ||||| | Sbjct 37927 CGAGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGAGGAATACCTTCCTTGTCTT 37986 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 ||||||| || || | ||| |||||||| ||||| || | || || | | Sbjct 37987 GAATTTTTTGTTTTACATTGTCGATAGTGTCAGAAGACTCGACTTCTAAAGTAATCATCT 38046 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 |||||||||| || || |||||||| |||||| Sbjct 38047 TTCCAGTAAGTGTCTTGACAAAGATTTGCATG 38078 >seq71 Length=102704 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | |||||||||||||| | ||| || || |||| ||| |||||| Sbjct 21498 ACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCACTCAAAGTACGACCATCCTCA 21557 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || ||||| || ||||||| | ||| || || || ||||| |||||||| ||||| | | Sbjct 21558 AGTTGTTTACCAGCAAAGATAAGTCTCTGTTGGTCAGGAGGGATACCTTCCTTGTCTTGA 21617 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || ||| |||||| ||| | | |||| ||||| || | || || || || Sbjct 21618 ATCTTTTGCTTGACATTTTCGATACTATCAGAAGATTCGACTTCTAAAGTAATCGTCTTG 21677 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || |||||||| || || ||||| ||||| Sbjct 21678 CCGGTAAGAGTCTTTACGAAGATTTGCAT 21706 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | |||||||||||||| | ||| || || |||| ||| | |||||| Sbjct 21270 ACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCACTCAAAGTACGGCCATCCTCA 21329 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| || ||| | || || | | ||| || || |||||||||||||| || || | Sbjct 21330 AGCTGCTTGCCGGCGAAAATGAGACGTTGTTGGTCAGGAGGAATACCTTCCTTATCTTGG 21389 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || ||| |||||| | | | | |||| | || || || | || ||||| || Sbjct 21390 ATCTTTTGCTTGACATTTTCAATACTATCAGAGGACTCAACCTCCAAGGTAATGGTCTTA 21449 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| ||||| || |||||||| ||||| Sbjct 21450 CCAGTGAGAGTCTTGACAAAGATTTGCAT 21478 >seq80 Length=97372 Score = 98.7 bits (108), Expect = 9e-16 Identities = 106/137 (77%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCCT 94856 || ||||| | ||||||||||||||| | |||||| ||||||| || || || || | Sbjct 13666 ACTAAGTGGAGAGTAGATTCCTTTTGGATGTTATAGTCGCTCA-AG-GTACGACCGTCTT 13723 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 | || ||||| ||| ||||||| | | ||| || || |||||||||||||| ||||| | Sbjct 13724 CGAGTTGTTTACCGGCAAAGATAAGACGTTGTTGGTCAGGAGGAATACCTTCCTTGTCTT 13783 Query 94917 AAATTTTTGCCTTGACG 94933 ||| ||| ||||||| Sbjct 13784 GAATCTTTTGCTTGACG 13800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448282491943440