Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F000825725.1_202014-12-08] 1,554 sequences; 49,238,270 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq67 206 4e-49 seq235 196 8e-46 seq514 185 1e-42 >seq67 Length=107840 Score = 206 bits (228), Expect = 4e-49 Identities = 208/268 (78%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||||||||| | ||| |||||| |||||||| ||||| || |||||||| ||||| Sbjct 86562 GCCAAGCGTCATCGTAAGAT-TCTTCGTGATAACATTCAAGGTATTACCAAGCCTGCTAT 86504 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| || ||||||||||| ||||||||| ||||||| | |||||||||| | Sbjct 86503 TCGTCGTCTTGCCCGTCGTGGTGGTGTCAAGCGTATCTCTGGTCTCATCTATGAAGAAAC 86444 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| | || ||||||| |||||| | | |||||| | ||||||| | ||||| || Sbjct 86443 TCGTAACGTCTTGAAGACTTTCCTCGAAAACGTTATTCGTGATGCTGTTACTTATACTGA 86384 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | |||||||| ||||| ||||| | |||||||| | || | ||||| Sbjct 86383 ACATGCCAAGAGAAAGACTGTTACCTCTTTGGATGTTGTCTATGCTCTCAAGAGACAAGG 86324 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||| | |||||||| || ||||| Sbjct 86323 CCGTACCCTCTATGGTTTCGGTGGTTAA 86296 >seq235 Length=58153 Score = 196 bits (216), Expect = 8e-46 Identities = 192/245 (78%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCG-CAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||||||||| |||| |||||| |||||||| ||||| || |||||||| ||||| Sbjct 32395 GCCAAGCGTCATCGTAAGAT-TCTTCGTGATAACATTCAAGGTATTACCAAGCCTGCTAT 32453 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| || ||||||||||| ||||||||| ||||||| | |||||||||| | Sbjct 32454 TCGTCGTCTTGCCCGTCGTGGTGGTGTCAAGCGTATCTCTGGTCTCATCTATGAAGAAAC 32513 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| | || |||||| ||||||| | | |||||| | ||||||| || || || || Sbjct 32514 TCGTAACGTCTTGAAGTCCTTCCTCGAAAACGTTATTCGTGATGCTGTCACTTACACTGA 32573 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | |||||||| ||||| ||||| | |||||||| | || | ||||| Sbjct 32574 ACATGCCAAGAGAAAGACTGTTACCTCGTTGGATGTTGTCTATGCTCTCAAGAGACAAGG 32633 Query 16672 CCGTA 16676 ||||| Sbjct 32634 CCGTA 32638 >seq514 Length=33333 Score = 185 bits (204), Expect = 1e-42 Identities = 199/261 (76%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCG-CAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||||| |||| |||||| |||||||| ||||| || |||||||| ||||| Sbjct 12664 GCTAAGCGTCATCGTAAGAT-TCTTCGTGATAACATTCAAGGTATTACCAAGCCTGCTAT 12722 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| || ||||||||||| ||||||||| ||||||| | |||||||||| | Sbjct 12723 TCGTCGTCTTGCCCGTCGTGGTGGTGTCAAGCGTATCTCTGGTCTCATCTATGAAGAAAC 12782 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || ||||||| ||||| | | ||||| | ||||||| | ||||| || Sbjct 12783 CCGTAACGTCTTGAAGACTTTCCTTGAAAATGTTATTCGTGATGCTGTTACTTATACTGA 12842 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | |||||||| || ||| ||||| | |||||||| | || | ||||| Sbjct 12843 ACATGCCAAGAGAAAGACTGTTACTTCCTTGGATGTTGTCTATGCTCTCAAGAGACAAGG 12902 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 |||| | || ||||| || Sbjct 12903 TCGTACTCTCTACGGTTTCGG 12923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073779166922