Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F000825725.1_202014-12-08] 1,554 sequences; 49,238,270 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq862 154 2e-32 >seq862 Length=17893 Score = 154 bits (170), Expect = 2e-32 Identities = 547/845 (65%), Gaps = 28/845 (3%) Strand=Plus/Minus Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246 |||||||||| || | ||||| || || || ||||| |||| | || || || Sbjct 17778 TTGATAATCAGAGACACGCTTTTCAAAGAAGTTGGTCTTGCCTTGAAGAGAGATCATGTC 17719 Query 21247 CATAAAATCAAATGGATTTTCAG--ATTTAAATATTTT--ATTACAACCCAGTTCTGATA 21302 |||||| ||||||||||| || || ||||| || | | | ||| || || Sbjct 17718 CATAAAGTCAAATGGATTGGTAGCCATGTAAATCTTGTCGAATCCAAG--AGCAACCATG 17661 Query 21303 ATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCA 21362 | | | ||| || || ||||| || || |||||||| || || | ||||| ||||| | Sbjct 17660 AGA--CGATCAGCAACGAATTCGATGTACTGACACATCAAGGCAGAGTTCATGCCGATGA 17603 Query 21363 ATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTA 21422 || |||||||| | |||||||| || ||| || ||| ||||| | || | Sbjct 17602 GAGCGACGGGAAGAGCATCCGTCAAAAATTCTTGTTCAATGCTGACAGCTTCCAAGATGA 17543 Query 21423 TATTTATTATCCTAGATGTACTAGGGGGAT-ACAATAATTGTTTAAACATCAAACATGCA 21481 ||| | | | | ||||| | | || | || | | ||| | | ||| ||| Sbjct 17542 TATCCTTGACGCGTTCTTGGCTAGGACGCTTACGAAGATGGGT-AAATAAAAGACAAGCA 17484 Query 21482 AAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGC 21541 || ||| ||| | ||||||||| | || || |||||||| ||||| ||||||||| Sbjct 17483 AAGTCAGTATGAAGACCTTCATCACGACAGATCAATTCATTGCTGAATGTCAAACCGGGC 17424 Query 21542 ATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCC 21601 || | || | ||||| | |||||| || || ||||| | || || ||||| || || Sbjct 17423 ATCAGACCACGTTTTTTGAGCCAAAAGATGGAAGCAAAGGAACCAGAGAAGAAGATACCT 17364 Query 21602 TCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCAT 21661 || || |||||||| ||||| | |||||| | | ||| | ||| | |||||| Sbjct 17363 TCGACAGCAGCAAAGGCAACAAGACGTTCAGCAAA---AGAACCGTTAGAGGAAATCCAT 17307 Query 21662 TTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGA 21721 || ||||| | |||||| || |||||| || || |||||||| |||||| Sbjct 17306 TTGAAGGCCCAATCAGCCTTTCTCTTGATACAAGGGATAGTGTCAATAGC--AGAAAAGA 17249 Query 21722 TGAtttttttCATCT---ACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCA 21778 |||| |||| ||| || | || ||| || |||| Sbjct 17248 GCATTTCTTTC-TCTTGGTTGTCTTTGATATAAGTGTCAATCAAAAGACTGTAAGTTTCT 17190 Query 21779 GAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTC-TGAACATTG 21837 | || |||||||| ||| || ||||| || || |||||| | || || ||| ||| Sbjct 17189 GCGTGAATATTTTCAATCATGATTTGAAAGCCATAGAAACATTTAGCTTCAGGAATCTTG 17130 Query 21838 AACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAA 21897 || || | |||| |||| ||||||||||||| || || ||||| | ||||| Sbjct 17129 -ACTTCATCACAAAAGTTTTGAACCAAGTTTTCATTAACAATGCCATCTGAACCAGCAAA 17071 Query 21898 AAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTA---ATTTTTTCCAATC 21954 || ||||| | ||||| | |||||||| || || | |||| |||||| Sbjct 17070 GAAGGCCAAAACGCGAGAGATAAAGAAACGTTCGTTTTCGGTCATCTTGTTTTCCCAATC 17011 Query 21955 TAATAAA--TCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTT 22012 || || || || ||||| | |||||||| |||||||||| ||| ||| || Sbjct 17010 --ATGAAGGTCCTTGCTCAAATCGATTTCTTCAGCTGTCCAAAAGGAAGCTTCAGCTTTC 16953 Query 22013 TTATA 22017 ||||| Sbjct 16952 TTATA 16948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531890467826960