Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F000825725.1_202014-12-08] 1,554 sequences; 49,238,270 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq862 235 6e-57 seq656 206 3e-48 >seq862 Length=17893 Score = 235 bits (260), Expect = 6e-57 Identities = 604/908 (67%), Gaps = 30/908 (3%) Strand=Plus/Minus Query 92742 TTAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACA 92801 ||||||||| ||||||| ||||| || ||| || | ||| ||||| |||||| Sbjct 17841 TTAGAAATCAGCATCTAAGGTAAAAGTCTTTTCAGCAGGCTGCTTGTTCATGACACCAGC 17782 Query 92802 TTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGA 92861 ||| || || || ||||||||||| || ||||| |||| | ||| ||| Sbjct 17781 ACGTTGATAATCAGAGACACGCTTTTCAAAGAAGTTGGTCTTGCCTTGAAGAGAGATCAT 17722 Query 92862 ATTCACTA-GTGAT-TGGATTCTTGGCGTTATAATACTTTTCA---CC--GATCAACTCG 92914 | || | || | |||||| | || | ||| ||| || || || |||| Sbjct 17721 GTCCATAAAGTCAAATGGATTGGTAGCCATGTAAATCTTGTCGAATCCAAGAGCAAC--- 17665 Query 92915 TACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCT 92974 || | | |||||| || ||||| ||||||||| ||||||| || | ||||| || Sbjct 17664 --CATGAGACGATCAGCAACGAATTCGATGTACTGACACATCAAGGCAGAGTTCATGCCG 17607 Query 92975 AGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTC 93034 | ||| || || ||||| || ||||| || |||| || || || ||||| Sbjct 17606 ATGAGAGCGACGGGAAGAGCATCCGTCAAAAATTCTTGTTCAATGCTGACAGCTTCCAAG 17547 Query 93035 AAGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCAC 93094 | ||| || | || | | || | | | ||||| | | ||| || || || Sbjct 17546 ATGATATCCTTGACGCGT-TCTTGGCTAGGACGCTTACGA-AGATGGGTAAATAAAAGAC 17489 Query 93095 --GCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAAC 93152 |||||||| ||||| | |||||| || || | ||||| |||||||||||||| |||| Sbjct 17488 AAGCAAAGTCAGTATGAAGACCTTCATCACGACAGATCAATTCATTGCTGAATGTCAAAC 17429 Query 93153 CTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTA 93212 | || | ||| || ||||| ||||||||||| || |||||||| |||||| || || | Sbjct 17428 CGGGCATCAGACCACGTTTTTTGAGCCAAAAGATGGAAGCAAAGGAACCAGAGAAGAAGA 17369 Query 93213 TACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGA 93272 ||||||| || || ||||| || |||| |||||| |||||| || ||| | | Sbjct 17368 TACCTTCGACAGCAGCAAAGGCAACAAGACGTTCAGCAAAAGAACCG---TTAGAGGAAA 17312 Query 93273 TCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAA 93332 ||||||| || |||||||| || ||| |||| |||||||| | || || ||||| || Sbjct 17311 TCCATTTGAAGGCCCAATCAGCCTTTCTCTTGATACAAGGGATAGTGTCAATAGCAGAAA 17252 Query 93333 ATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTT 93392 | || ||| ||| | ||| || || || || || || ||| || ||| Sbjct 17251 AGAGCATTTCTTTCTCTTGGTTGTCTTTGATATAAGTGTCAATCAAAAGACTGTAAGTTT 17192 Query 93393 CAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCT 93452 | | || | ||| || || ||||| || || ||||||||| ||||||| | |||| Sbjct 17191 CTGCGTGAATATTTTCAATCATGATTTGAAAGCCATAGAAACATTTAGCTTCAGGAATCT 17132 Query 93453 GCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaa 93512 ||||| | | |||| | | || | |||||||| || || ||||| || | |||| Sbjct 17131 TGACTTCATCACAAAAGTTTTGAACCAAGTTTTCATTAACAATGCCATCTGAACCAGCAA 17072 Query 93513 aaaaaGCCAATATATGCTTTATA---AAATGT---TTCTC-ATCATCTTTAAGCTTATCC 93565 | || ||||| | | ||| ||| || || || ||||||| || ||| Sbjct 17071 AGAAGGCCAAAACGCGAGAGATAAAGAAACGTTCGTTTTCGGTCATCTT----GTTTTCC 17016 Query 93566 CAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCT 93625 ||||| || || || | ||||| |||||| | |||||||| || ||||| ||| Sbjct 17015 CAATCATGAAGGTCCTTGCTCAAATCGATTTCTTCAGCTGTCCAAAAGGAAGCTTCAGCT 16956 Query 93626 TTTTTGTA 93633 || || || Sbjct 16955 TTCTTATA 16948 >seq656 Length=25916 Score = 206 bits (228), Expect = 3e-48 Identities = 596/905 (66%), Gaps = 24/905 (3%) Strand=Plus/Plus Query 92742 TTAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACA 92801 ||||||||| ||||||| ||||| || ||| || | ||| ||||| |||||| Sbjct 422 TTAGAAATCAGCATCTAAGGTAAAGGTCTTTTCAGCAGGCTGCTTGTTCATGACACCAGC 481 Query 92802 TTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGA 92861 ||| || || || ||||||||||| || ||||| |||| | ||| ||| Sbjct 482 ACGTTGATAGTCAGAGACACGCTTTTCAAAGAAGTTGGTCTTGCCTTGAAGAGAGATCAT 541 Query 92862 ATTCACTA-GTGAT-TGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTA-CA 92918 | || | || | |||||| | || | ||| ||| || ||| | | | | Sbjct 542 GTCCATAAAGTCAAATGGATTGGTAGCCATGTAAATCTTGTCGA--ATCCAAGAGCAACC 599 Query 92919 ATAAT-CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGA 92977 |||| | ||| || || ||||| ||||| || ||||||| || ||||||| || | Sbjct 600 ATAAGGCGATCGGCAACGAATTCGATGTATTGGCACATCAAGGCAGAATTCATGCCGATG 659 Query 92978 AGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG 93037 ||| || || ||||| || ||||| || || | || || || ||||| | | Sbjct 660 AGAGCAACGGGAAGAGCATCCGTCAAAAATTCCTGTTCAATGCTGACAGCTTCCAAGATG 719 Query 93038 ATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCAC--G 93095 || || | || | | || | | | ||||| | | ||| || || || | Sbjct 720 ATATCCTTGACGCGT-TCTTGGCTAGGACGCTTACGA-AGATGGGTAAATAAAAGACAAG 777 Query 93096 CAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTG 93155 ||||||| ||||| | ||||| || || | ||||| |||||||||||||| ||||| | Sbjct 778 CAAAGTCAGTATGAAGGCCTTCATCACGACAGATCAATTCATTGCTGAATGTCAAACCAG 837 Query 93156 GTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATAC 93215 | | || || ||||||||||||||||| || |||||||| |||||| || || |||| Sbjct 838 GCATCAAACCACGTTTCTTGAGCCAAAAAATAGAAGCAAAGGAACCAGAGAAGAAGATAC 897 Query 93216 CTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCC 93275 |||| || || ||||| || |||| ||| || |||||| || ||| | |||| Sbjct 898 CTTCGACAGCAGCAAAGGCAACAAGACGCTCAGCAAAAGAACCG---TTAGAGGAAATCC 954 Query 93276 ATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATA 93335 | || || |||||||| || ||| | || ||||| || | || || ||||| ||||| Sbjct 955 ACTTGAAGGCCCAATCAGCCTTTCTTTTGATACAGGGGATAGTGTCAATAGCAGAAAATA 1014 Query 93336 GGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAG 93395 | ||| ||| | |||| || || || || || || ||| || |||| | Sbjct 1015 GCATTTCTTTCTCTTGATTATCTTTGATATAAGTGTCAATCAAAAGACTGTAAGTTTCTG 1074 Query 93396 AATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCA 93455 || | || || || ||||| || || ||||||||| ||||||| | |||| | Sbjct 1075 CGTGAATGTTTTCAATCATGATTTGAAAGCCATAGAAACATTTAGCTTCAGGAATCTTGA 1134 Query 93456 CTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaa 93515 |||| | | |||| | | || | |||||||| || || ||||| || | ||||| | Sbjct 1135 CTTCATCACAAAAGTTTTGAACCAAGTTTTCATTAACAATGCCATCTGAACCAGCAAAGA 1194 Query 93516 aaGCCAATATATGCTTTATAAA------ATGTTTCTCA-TCATCTTTAAGCTTATCCCAA 93568 | ||||| | | ||||| | || ||| ||||||| || |||||| Sbjct 1195 AGGCCAAGACGCGAGAGATAAAGAAGCGTTCGTTTTCAGTCATCTT----GTTTTCCCAA 1250 Query 93569 TCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTT 93628 || || || || | ||||| |||||| | |||||||| || ||||| ||||| Sbjct 1251 TCATGAAGGTCCTTGCTCAAATCGATTTCTTCAGCTGTCCAAAAGGAAGCTTCAGCTTTC 1310 Query 93629 TTGTA 93633 || || Sbjct 1311 TTATA 1315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556849982978960