Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F000825725.1_202014-12-08] 1,554 sequences; 49,238,270 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq815 113 9e-20 seq291 107 4e-18 seq862 96.9 7e-15 >seq815 Length=19846 Score = 113 bits (124), Expect = 9e-20 Identities = 482/759 (64%), Gaps = 12/759 (2%) Strand=Plus/Plus Query 244687 GGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAG 244746 ||||| ||| ||||| || || || || | | | ||| | ||||| || || || || Sbjct 16673 GGCCAAGTTACAGACAGCGACTTCATCAGGACTCGAGTATTCAACAATTTCTGTACACAG 16732 Query 244747 GTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTT 244806 ||| ||||| ||||| || |||| || || ||||| ||| ||| || || ||||| Sbjct 16733 GTTGCTGCATTTGATCGTACCCAAGTTTTGCTGATTACTCTTTCTGTTACAAGCATCCTT 16792 Query 244807 GTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTC 244866 ||||| ||||| || || ||||| || || | | | | | ||| || | Sbjct 16793 ATAGAGTATGAACGGATTACCTGTCTCCGTTTGAGCTTCCAAAATGGCATACCACAGCTT 16852 Query 244867 CCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTC 244926 |||||||| || | ||| | || || ||||| || || || | Sbjct 16853 TTGAGCCTTGATTGTTTCTCTAGCTCTTCCTTCACGTTCGTATTTTTCATAGAGAGCAAC 16912 Query 244927 GAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCA 244986 ||||| ||||||| || | || || || | || || | ||| ||| Sbjct 16913 AAACTCATCACCCCAGATTTCATGTAATCCAGGAGCCTCATTGGGACAAAACAGAGACCA 16972 Query 244987 CTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAG 245046 || |||||||| |||| | |||||||||||| || || |||||||| || | ||| || Sbjct 16973 ATCACCGCCGTCTCTGACACGCTGCATGAAGAGATCAGGAATCCAGAGAGCATAGAACAG 17032 Query 245047 GTCCCTGGTCCTCTG--CTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAG 245104 || | | ||||| ||||| |||| ||| || | || || |||||| || Sbjct 17033 ATCGC--GAGCTCTGATTTCGTCTTTGCCAAAGTTTTTTCGCAAATCTAAAAAGGTGAAA 17090 Query 245105 ACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCC 245164 | ||| | |||||||| |||| ||| | |||| ||||| || || || || || || Sbjct 17091 ATGTCTGCATGCCAGGGTTCCAAGTACATTGCGAATGCGCCCGGACGTTTATTACCGCCT 17150 Query 245165 TGGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTT 245220 || || | | | ||||| |||||| | || || | |||| || ||||| Sbjct 17151 TGATCGA----CATAACGAGCCGTATTGTTGAAAACACGTAGCATGGGCAGTAATCCGTT 17206 Query 245221 AGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACAT 245280 |||| ||||||||||| || || | || | | | | |||| ||| || Sbjct 17207 GGAGTAACCGTTGGTGCCGGCAATATATGATCCACTAGCACGAATGTTGTGAATGTTCAA 17266 Query 245281 GCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCC 245340 ||| | ||||| || ||||||||| | || ||| | |||| || || || || Sbjct 17267 GCCAATGCCGCCTGCTGTCTTGGAGATTTGAGCACAGATTTTGAGCGTCTCATAGATACC 17326 Query 245341 CTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCT 245400 || || || ||||||| |||||| ||||| || |||| ||||| || | Sbjct 17327 TTCGATCGAATCTTCCTTCATGGTGAGCAAGAAGCAAGAAGACATTTGGGGACGAGGTGT 17386 Query 245401 GCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTA 245439 || | || || | ||| || || ||||| |||||||| Sbjct 17387 GCCTGCATTAAATAAAGTAGGACTAGCGTGTGTAAAGTA 17425 >seq291 Length=50391 Score = 107 bits (118), Expect = 4e-18 Identities = 483/760 (64%), Gaps = 14/760 (2%) Strand=Plus/Minus Query 244687 GGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAG 244746 ||||| ||| ||||| || || || || | | | ||| | ||||| || || || || Sbjct 27956 GGCCAAGTTACAGACAGCGACTTCATCAGGACTTGAGTATTCAACAATTTCTGTACACAG 27897 Query 244747 GTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTT 244806 ||| ||||||||||| || |||| || || ||||| ||| ||| || || ||||| Sbjct 27896 GTTGCTGCACTTGATCGTACCCAAGTTTTGCTGATTACTCTTTCTGTTACAAGCATCCTT 27837 Query 244807 GTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTC 244866 ||||| ||||| || || ||||| || || | | | | | ||| || | Sbjct 27836 ATAGAGTATGAATGGATTACCAGTCTCCGTTTGTGCCTCCAAAATGGCATACCACAGCTT 27777 Query 244867 CCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTC 244926 |||||||| || | | | | || || ||||| || || || | Sbjct 27776 TTGAGCCTTGATTGTTTCTCTACCTCTTCCTTCACGTTCGTATTTTTCATAGAGAGCAAC 27717 Query 244927 GAACTCGGGGCCCCAGACCTCGTCTAGGCCGGG-GCACGACGCCGGGCACATGAGACTCC 244985 || ||| |||||||| || | || || || || | ||||| | ||| || Sbjct 27716 AAATTCGTCACCCCAGACTTCATGTAATCCAGGAGCTTCATTG-GGGCAAAATAGAGACC 27658 Query 244986 ACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGA 245045 | || || ||||| |||| | ||||||||| || || || | |||||| || | ||| | Sbjct 27657 AATCACCACCGTCTCTGACACGCTGCATGAAAAGATCAGGAACCCAGAGAGCATAGAACA 27598 Query 245046 GGTCCCTGGTCCTCTGCT--CGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAA 245103 | || | | ||||| | |||| ||| ||| || | || || |||||| || Sbjct 27597 GATCACGAG--CTCTGATTTCGTCTTTACCAAAGTTTTTTCGCAAGTCTAAAAAGGTGAA 27540 Query 245104 GACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCC 245163 | ||| | |||||||| |||| ||| | |||| ||||| || ||||| || || || Sbjct 27539 AATGTCTGCATGCCAGGGTTCCAAGTACATTGCGAATGCGCCCGGACGCTTATTACCGCC 27480 Query 245164 CTGGTCCACCATCCTCTCGAGCGC----GTTGAAGATGCGCAGGGTAGGCACTATGCCGT 245219 || || || | ||||| |||||| | || || | |||| || |||| Sbjct 27479 TTGATCGACA----TAACGAGCCGTATTGTTGAAAACACGGAGCATGGGCAATAATCCGT 27424 Query 245220 TAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACA 245279 | |||| ||||||||||| ||||| | || | | | | |||| ||| || Sbjct 27423 TGGAGTAACCGTTGGTGCCGGCAATGTATGATCCACTAGCACGAATGTTGTGAATGTTCA 27364 Query 245280 TGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGC 245339 ||| | ||||| || ||||||||| | || ||| | |||| || || || | Sbjct 27363 AGCCAATACCGCCTGCTGTCTTGGAGATTTGAGCACAGATTTTGAGCGTCTCATAGATAC 27304 Query 245340 CCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGC 245399 | || || || ||||||| |||||| || || || |||| ||||| || Sbjct 27303 CTTCGATCGAATCTTCCTTCATGGTGAGCAAGAAACAAGAAGACATTTGGGGACGAGGTG 27244 Query 245400 TGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTA 245439 ||| | || || ||||| || || ||||| || ||||| Sbjct 27243 TGCCTGCATTAAATAGAGTAGGACTAGCGTGTGTGAAGTA 27204 >seq862 Length=17893 Score = 96.9 bits (106), Expect = 7e-15 Identities = 349/535 (65%), Gaps = 22/535 (4%) Strand=Plus/Plus Query 42618 GCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAG 42677 || || || || || || || ||||||| ||||| || ||||| |||| ||||| Sbjct 17257 GCTATTGACACTATCCCTTGTATCAAGAGAAAGGCTGATTGGGCCTTCAAATGGATT--- 17313 Query 42678 AGTCCCG--ACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCT 42735 ||| ||| | || | || | || || |||||| | || ||||| || |||| Sbjct 17314 --TCCTCTAACGGTTCTTTTGCTGAACGTCTTGTTGCCTTTGCTGCTGTCGAAGGTATCT 17371 Query 42736 TCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGT-GTC-GATGCCCGG 42793 ||||||| || |||| || |||||||| |||||||| | || || ||| ||||||||| Sbjct 17372 TCTTCTCTGGTTCCTTTGCTTCCATCTTTTGGCTCAA--AAAACGTGGTCTGATGCCCGG 17429 Query 42794 ACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTG 42853 | || ||| || ||| | ||| | | || || || || |||| |||||||| || Sbjct 17430 TTTGACATTCAGCAATGAATTGATCTGTCGTGATGAAGGTCTTCATACTGACTTTGCTTG 17489 Query 42854 CCTCCTGTTCTCGAGCCACCTCAGGCACAAGC--CCTCG-AAGGAGCGGGTCCGGGCCAT 42910 || || | | ||| || | |||| ||| | | || || ||| || || Sbjct 17490 ---TCTTTTATTTACCCATCT---TCGTAAGCGTCCTAGCCAAGAACGCGTCAAGGATAT 17543 Query 42911 CATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCT 42970 |||| ||| || || || || | || || | ||| | | || ||||| | || Sbjct 17544 CATCTTGGAAGCTGTCAGCATTGAACAAGAATTTTTGACGGATGCTCTTCCCGTCGCTCT 17603 Query 42971 GGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCT 43030 ||||||||||| | | | ||||| |||||||| | | ||| || || | |||| | Sbjct 17604 CATCGGCATGAACTCTGCCTTGATGTGTCAGTACATCGAATTCGTTGCTGATCGTCTCAT 17663 Query 43031 -GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGA 43089 || | ||| | || | | |||| | | || || ||||||||||| | Sbjct 17664 GGTTGCTCTTGGAT-TCGACAAGATTTACATGGCTACCAATCCATTTGACTTTATGGACA 17722 Query 43090 ACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCA 43144 ||||| | | |||||||||||||| || || ||||| ||| | || || || Sbjct 17723 TGATCTCTCTTCAAGGCAAGACCAACTTCTTTGAAAAGCGTGTCTCTGATTATCA 17777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944320856211040