Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F000825725.1_202014-12-08] 1,554 sequences; 49,238,270 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq453 104 2e-17 seq49 104 2e-17 >seq453 Length=36563 Score = 104 bits (114), Expect = 2e-17 Identities = 262/402 (65%), Gaps = 21/402 (5%) Strand=Plus/Minus Query 20203 ATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGCAAGCATATA 20262 ||| |||| || || || || || || || |||| | || ||||| |||| ||| Sbjct 19511 ATCGCCCATTGTATGTATGAATTCACCAGGATCAAGATCTGTTACATGCGCAATCATGCG 19452 Query 20263 AGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGACCT 20322 || || || | ||| |||||| || |||||||| |||| ||||| || | || | Sbjct 19451 TGTCAAAAGTGCATAAGAGGCAATATTGAAAGGAACACCCAGTCCCATATCACAAGAACG 19392 Query 20323 CTGATACAGCTGACAGGAAAGCT---------CACCGTC------------AGCTACATA 20361 ||||| ||| ||| || | || | || || || |||||| Sbjct 19391 TTGATAAAGCACACAAGACAACTTGGCACGTCCGCCATCCTGAGGTGGATTAGATACATA 19332 Query 20362 AAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCA 20421 ||||||||| || ||||| ||||| | ||||| | | | || || |||||||| Sbjct 19331 AAATTGACAAAAGGCATGACAAGGCGGTAAAGCCATGATAGGAATATCTGCAGGGTTCCA 19272 Query 20422 CGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGA 20481 || ||| ||||||||| | ||| ||||| |||||||| || | | | Sbjct 19271 TGCTGACAGAATGATTCTGCGATCAGTAGGATTGTTTTTTATAGTGTCGATCACTTGTTG 19212 Query 20482 CAATTGGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAA 20541 ||||| |||| || || |||||||| |||| ||| || ||||| || ||||| Sbjct 19211 TAATTGATCAATGCCTTGCCCTGTATAATCAGTATCACAATCAACGTATTTGGCACCAAA 19152 Query 20542 GTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTC 20583 ||| ||||| || || ||||| || ||||| | ||| || || Sbjct 19151 GTGTCTCCATTGAAATCCGTAGACTGGTCCAAGATCACCTTC 19110 >seq49 Length=122128 Score = 104 bits (114), Expect = 2e-17 Identities = 374/581 (64%), Gaps = 37/581 (6%) Strand=Plus/Minus Query 20203 ATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGCAAGCATATA 20262 ||| |||| || || || || || || || |||| | || ||||| |||| ||| Sbjct 120495 ATCGCCCATTGTATGTATGAATTCACCAGGATCAAGATCTGTTACATGCGCAATCATGCG 120436 Query 20263 AGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGACCT 20322 || || || | ||| ||||| || |||||||| |||| ||||| || | || | Sbjct 120435 TGTCAAAAGTGCATAAGAAGCAATATTGAAAGGAACACCCAGCCCCATATCACAAGAACG 120376 Query 20323 CTGATACAGCTGACAGGAAAGCT---------CACCGTC------------AGCTACATA 20361 ||||| ||| ||| || | || | || || || |||||| Sbjct 120375 TTGATAGAGCACACAAGATAACTTGGCACGTCCGCCATCCTGCGGTGGATTAGATACATA 120316 Query 20362 AAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCA 20421 ||||||||| || ||||| || || | ||||| | | | || || |||||||| Sbjct 120315 AAATTGACAAAAGGCATGACAAGGTGGTAAAGCCATGATAGGAATATCTGCAGGGTTCCA 120256 Query 20422 CGCACACATAATGATTCTTCTATC-GTGCGGATTATTTTTTAT----TAAATCCACAATG 20476 || | | ||||||||| | ||| ||| ||||| |||||||| | ||| ||| || Sbjct 120255 TGCTGATAGAATGATTCTGCGATCAGTG-GGATTGTTTTTTATAGTGTCAAT-CAC-TTG 120199 Query 20477 TACGACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCC 20536 | ||||| |||| || || |||||||| |||| ||| || ||||| || Sbjct 120198 T--TGTAATTGATCAATGCCTTGTCCTGTATAATCAGTATCACAATCAACGTATTTGGCA 120141 Query 20537 CCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGCC 20596 |||||||| ||||| || || ||||| || ||||| | ||| || || | | ||| | Sbjct 120140 CCAAAGTGTCTCCATTGAAATCCGTAGACTGGTCCAAGATCGCCTTCACGACGGTGAGTA 120081 Query 20597 AGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGAC---TCCT 20653 || || | | | || | || | || || || ||||| |||||||| || | Sbjct 120080 AGACCCAACTTGTCGAGATATTCGCGAGAACCGTTGCCATCCCAAATCTTGACGTTTCTT 120021 Query 20654 GTTCTTGAAAGCTCCCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGCACT 20713 ||| || | | | |||| ||| || || | |||||||||||||||| || Sbjct 120020 TCACTT---AGATGCTTTGAGTTTGTATCTCCTTTAATGAACCAAAGCAGCTCTTCCAAG 119964 Query 20714 ACGCCTCGCCAAAACACCCGCTTTGTGGTTAGTAAGGGAAA 20754 || || | | || || |||||||| || || | ||||| Sbjct 119963 ACTCCCCTGAAGAATACACGCTTTGTTGTCAGAAGTGGAAA 119923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441364226333360