Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F000825725.1_202014-12-08] 1,554 sequences; 49,238,270 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq862 109 1e-18 seq656 102 2e-16 seq554 89.7 1e-12 >seq862 Length=17893 Score = 109 bits (120), Expect = 1e-18 Identities = 166/237 (70%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 269152 ATCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTC 269211 ||||| ||||| | | | ||| ||| || ||||||||||| ||||||||| || | Sbjct 17605 ATCGGCATGAACTCTGCCTTGATGTGTCAGTACATCGAATTCGTTGCTGATCGTCTCATG 17664 Query 269212 ACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTA 269271 || || || | || || | |||| | | ||||| || | ||||||||| | Sbjct 17665 GTTGCTCTTGGATTCGACAAGATTTACATGGCTACCAATCCATTTGACTTTATGGACATG 17724 Query 269272 ATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAACGTCCT 269331 || || || |||| ||||| |||||||| |||||||||||| || ||||||||| || Sbjct 17725 ATCTCTCTTCAAGGCAAGACCAACTTCTTTGAAAAGCGTGTCTCTGATTATCAACGTGCT 17784 Query 269332 GGTGTAATGA------ATCCAGAAGACAATATTTTTGCCATCGATGATGATTTTTAA 269382 ||||| |||| | || | || || | |||| || | |||| |||||| ||| Sbjct 17785 GGTGTCATGAACAAGCAGCCTGCTGAAAAGACTTTTACCTTAGATGCTGATTTCTAA 17841 >seq656 Length=25916 Score = 102 bits (112), Expect = 2e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 269152 ATCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTC 269211 ||||| |||||| | | | ||| ||||| ||||||||||| || ||||| | | Sbjct 658 ATCGGCATGAATTCTGCCTTGATGTGCCAATACATCGAATTCGTTGCCGATCGCCTTATG 599 Query 269212 ACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTA 269271 || || || | || || | |||| | | ||||| || | ||||||||| | Sbjct 598 GTTGCTCTTGGATTCGACAAGATTTACATGGCTACCAATCCATTTGACTTTATGGACATG 539 Query 269272 ATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAACGTCCT 269331 || || || |||| ||||| |||||||| |||||||||||| |||||||||||| || Sbjct 538 ATCTCTCTTCAAGGCAAGACCAACTTCTTTGAAAAGCGTGTCTCTGACTATCAACGTGCT 479 Query 269332 GGTGTAATGAA 269342 ||||| ||||| Sbjct 478 GGTGTCATGAA 468 >seq554 Length=31345 Score = 89.7 bits (98), Expect = 1e-12 Identities = 212/313 (68%), Gaps = 12/313 (4%) Strand=Plus/Minus Query 325967 ATAGGCGTGATGAACTTCTTCAAGAACCCTGGAATTTCTAGAAGATTAGGGAAACAGCTA 326026 ||||| ||||| |||| | | ||| || ||||| || ||||| |||| |||| | Sbjct 9298 ATAGGTGTGATAAACTCCAAGAGGAAACCAGGAATATCCAGAAGCG-AGGGGAACATGGA 9240 Query 326027 -TGGAAAAAGTTCATGACGAGACCA--GAAATGTGAGTTCCGTCAACATCCGCGTCGGTC 326083 | || |||||| |||| ||||| || |||||| || ||| ||| || ||| Sbjct 9239 GTCGATAAAGTTGATGATCAGACCCTTGATATGTGAA--CCATCATGATCTTGATCTGTC 9182 Query 326084 ATGATCATCACATGACCGTAACGAAGCGAGG--ACGTGTCTTTG-TACACTTTACCGGTT 326140 |||||||||| | |||| || || | | ||| |||| ||| |||||| Sbjct 9181 ATGATCATCAAACGACCATATCGTAACTCATCAACG---CTTTCATACTTTTTACCATGC 9125 Query 326141 TGAAGGCCGAGAATTTGTTTGAGCGCTGTGATTTCTTCGTTCTTCGTGATGCTTGCCACG 326200 ||||| || ||||| |||| | |||||||||| |||||| ||| || Sbjct 9124 TGAAGACCAAGAATAGCCTTGATGTTTTTGATTTCTTCATTCTTCATGAGTTCAGCATTA 9065 Query 326201 GATGCATCGCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGCGA 326260 || |||| || |||||||||||||| ||||||| ||||| || ||||| || ||| Sbjct 9064 GAAACATCACGAACGTTCAATAGTTTACCACGAATGGGGAAAACACCATAGTAGTCACGA 9005 Query 326261 CCGACCACGGACA 326273 || || || |||| Sbjct 9004 CCAACTACTGACA 8992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179630912343612