Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F000825725.1_202014-12-08] 1,554 sequences; 49,238,270 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq686 91.5 2e-13 seq71 84.2 2e-11 >seq686 Length=24674 Score = 91.5 bits (100), Expect = 2e-13 Identities = 163/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 41974 TTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGT 42033 ||||| |||| || | | ||| | ||||| || | || || |||||||| || | Sbjct 10783 TTTATTGACCGCCACGAAGACGAAGAACCAAGTGAAGAGTAGATTCTTTTTGAATGTTAT 10724 Query 42034 AATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGT 42093 ||||| || ||| || |||| || || || ||||||||||| ||||| || || |||| Sbjct 10723 AATCACTCAAAGTACGACCGTCTTCGAGTTGTTTACCAGCGAAAATGAGACGTTGTTGGT 10664 Query 42094 CGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCG 42153 | | || | | ||||| || || ||||| |||| | | | | || | Sbjct 10663 CAGGAGGGATACCTTCCTTATCTTGAATCTTTTGCTTGACATTTTCGATACTATCAGAAG 10604 Query 42154 ATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 |||| || || | || || || ||||| || || |||||||| |||||||||||||| Sbjct 10603 ATTCAACTTCTAAAGTAATTGTCTTGCCGGTAAGAGTCTTTACGAAGATTTGCATTTT 10546 >seq71 Length=102704 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 41973 ATTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTG 42032 |||||| |||| || | | ||| | ||||| || | || |||||||| || ||| Sbjct 21243 ATTTATTGACCGCCACGAAGACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGGATGTTG 21302 Query 42033 TAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGG 42092 || ||| || ||| || | || || |||||||| || ||||| ||||| || || ||| Sbjct 21303 TAGTCACTCAAAGTACGGCCATCCTCAAGCTGCTTGCCGGCGAAAATGAGACGTTGTTGG 21362 Query 42093 TCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTC 42152 || | || | | ||||| || ||| ||||| |||| | | | | || Sbjct 21363 TCAGGAGGAATACCTTCCTTATCTTGGATCTTTTGCTTGACATTTTCAATACTATCAGAG 21422 Query 42153 GATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || || | || ||||| || || || || ||||| |||||||||||||| Sbjct 21423 GACTCAACCTCCAAGGTAATGGTCTTACCAGTGAGAGTCTTGACAAAGATTTGCAT 21478 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 |||||||| || ||||| ||| || ||| || | || || || || |||||||| || Sbjct 21516 TCCTTTTGGATGTTGTAGTCACTCAAAGTACGACCATCCTCAAGTTGTTTACCAGCAAAG 21575 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || |||| ||| ||||| | || | | |||||||| || ||||| |||| | Sbjct 21576 ATAAGTCTCTGTTGGTCAGGAGGGATACCTTCCTTGTCTTGAATCTTTTGCTTGACATTT 21635 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | | || ||||| || || | || || || ||||| || || |||||||| Sbjct 21636 TCGATACTATCAGAAGATTCGACTTCTAAAGTAATCGTCTTGCCGGTAAGAGTCTTTACG 21695 Query 42198 AAGATTTGCATTTT 42211 |||||||||||||| Sbjct 21696 AAGATTTGCATTTT 21709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543202248091360