Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F000825725.1_202014-12-08] 1,554 sequences; 49,238,270 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq71 120 2e-22 seq769 111 1e-19 seq243 111 1e-19 >seq71 Length=102704 Score = 120 bits (132), Expect = 2e-22 Identities = 161/222 (73%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || ||||||||||| || ||||| |||||||| || || | | | | | || || Sbjct 21498 ACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCACTCAAAGTACGACCATCCTCA 21557 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | |||||| ||||| | || | | ||||||||| || || ||||||||||| | Sbjct 21558 AGTTGTTTACCAGCAAAGATAAGTCTCTGTTGGTCAGGAGGGATACCTTCCTTGTCTTGA 21617 Query 15088 A--TTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 | |||||| || ||| |||| ||| |||| | ||| || ||||| ||||| || | Sbjct 21618 ATCTTTTGC--TTGACATTTTCGATACTATCAGAAGATTCGACTTCTAAAGTAATCGTCT 21675 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAATAA 15187 | || || ||||| ||||| || |||||||| ||| |||||| Sbjct 21676 TGCCGGTAAGAGTCTTTACGAAGATTTGCATTTTTTAAATAA 21717 Score = 109 bits (120), Expect = 4e-19 Identities = 153/213 (72%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || ||||||||||| || ||||| |||||||| || || | | | | | || || Sbjct 21269 AACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCACTCAAAGTACGGCCATCCTC 21328 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTC--A 15084 | || ||||| ||| | || | ||| |||||||| ||||| |||||||| || Sbjct 21329 AAGCTGCTTGCCGGCGAAAATGAGACGTTGTTGGTCAGGAGGAATACCTTCCTTATCTTG 21388 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 | |||||| || ||| |||| ||| |||| || || || ||||||||||| Sbjct 21389 GATCTTTTGC--TTGACATTTTCAATACTATCAGAGGACTCAACCTCCAAGGTAATGGTC 21446 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| || ||||| || ||||| ||||||||| Sbjct 21447 TTACCAGTGAGAGTCTTGACAAAGATTTGCATA 21479 >seq769 Length=21522 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || ||||| ||||| || ||||| ||||| || ||||| || | | | ||||| Sbjct 14277 ACCAAGTGAAGAGTAGATTCCTTTTGAATGTTATAGTCGCTTAGGGTACGACCATCTTCG 14218 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | |||||| ||||| | || | ||| ||||| || ||||| ||||||||||| | Sbjct 14217 AGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGAGGAATACCTTCCTTGTCTTGA 14158 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || ||||||| | || ||||| || | ||| || ||||| ||||| || || Sbjct 14157 ATCTTTTGTTTTACATTGTCGATAGTGTCAGAAGATTCAACTTCTAAAGTAATTGTCTTT 14098 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || ||||| |||||||| Sbjct 14097 CCAGTAAGTGTCTTGACAAAGATTTGCAT 14069 >seq243 Length=56764 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || |||||||| ||||| || ||||| ||||| || ||||| || | | | ||||| Sbjct 37869 ACCAAATGAAGAGTAGATTCCTTTTGGATGTTATAGTCGCTTAGGGTACGACCATCTTCG 37928 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | |||||| ||||| | || | ||| ||||| || ||||| ||||||||||| | Sbjct 37929 AGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGAGGAATACCTTCCTTGTCTTGA 37988 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 ||||| ||||||| | || ||||| || | || || ||||| ||||| | || Sbjct 37989 ATTTTTTGTTTTACATTGTCGATAGTGTCAGAAGACTCGACTTCTAAAGTAATCATCTTT 38048 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || ||||| |||||||| Sbjct 38049 CCAGTAAGTGTCTTGACAAAGATTTGCAT 38077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357385231218890