Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F000825725.1_202014-12-08] 1,554 sequences; 49,238,270 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq686 93.3 4e-14 seq656 91.5 1e-13 seq862 86.0 6e-12 >seq686 Length=24674 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | ||||| ||||||||||| || ||||| | || || ||| || || Sbjct 10757 ACCAAGTGAAGAGTAGATTCTTTTTGAATGTTATAATCACTCAAAGTACGACCGTCTTCG 10698 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 || ||||| |||||| | || | || || || || ||||| || || ||||| || Sbjct 10697 AGTTGTTTACCAGCGAAAATGAGACGTTGTTGGTCAGGAGGGATACCTTCCTTATCTTGA 10638 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || ||||||| | ||||| | || | | || ||||| | || | || ||| Sbjct 10637 ATCTTTTGCTTGACATTTTCGATACTATCAGAAGATTCAACTTCTAAAGTAATTGTCTTG 10578 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| ||||| ||||| || || ||||| Sbjct 10577 CCGGTAAGAGTCTTTACGAAGATTTGCAT 10549 >seq656 Length=25916 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 47355 GAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGA 47414 ||||| ||| |||||| ||| ||||| | || ||||| |||| || | | || Sbjct 712 GAAGCTGTCAGCATTGAACAGGAATTTTTGACGGATGCTCTTCCCGTTGCTCTCATCGGC 653 Query 47415 ATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAG 47474 ||||| | | ||||| | | ||||||||||| || ||||| ||||| | ||| | Sbjct 652 ATGAATTCTGCCTTGATGTGCCAATACATCGAATTCGTTGCCGATCGCCTTATGGTT--G 595 Query 47475 CTAAAGTATCC--CAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTT 47532 || | || | |||||||||| | |||||||| || |||||| ||| || | Sbjct 594 CTCTTGGATTCGACAAGATTTACATGGCTACCAATCCATTTGACTTTATGGACATGATCT 535 Query 47533 CGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATATAAACGT 47585 | || | |||||||||||||| || || ||||| ||| || ||| ||||| Sbjct 534 CTCTTCAAGGCAAGACCAACTTCTTTGAAAAGCGTGTCTCTGACTATCAACGT 482 >seq862 Length=17893 Score = 86.0 bits (94), Expect = 6e-12 Identities = 160/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 47355 GAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGA 47414 ||||| ||| |||||| || ||||| | || ||||| |||| || | | || Sbjct 17551 GAAGCTGTCAGCATTGAACAAGAATTTTTGACGGATGCTCTTCCCGTCGCTCTCATCGGC 17610 Query 47415 ATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAG 47474 |||||| | | ||||| | ||||||||||||| || || || || || | ||| | Sbjct 17611 ATGAACTCTGCCTTGATGTGTCAGTACATCGAATTCGTTGCTGATCGTCTCATGGTT--G 17668 Query 47475 CTAAAGTATCC--CAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTT 47532 || | || | |||||||||| | |||||||| || |||||| ||| || | Sbjct 17669 CTCTTGGATTCGACAAGATTTACATGGCTACCAATCCATTTGACTTTATGGACATGATCT 17728 Query 47533 CGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATATAAACGT 47585 | || | |||||||||||||| || || ||||| ||| || ||| ||||| Sbjct 17729 CTCTTCAAGGCAAGACCAACTTCTTTGAAAAGCGTGTCTCTGATTATCAACGT 17781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475491563396960