Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F000825725.1_202014-12-08] 1,554 sequences; 49,238,270 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq291 111 3e-19 seq328 107 3e-18 seq228 104 4e-17 >seq291 Length=50391 Score = 111 bits (122), Expect = 3e-19 Identities = 459/715 (64%), Gaps = 8/715 (1%) Strand=Plus/Minus Query 204884 TCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGAC 204943 || || || || || |||| ||| | |||||| | | |||| | ||||| ||| | Sbjct 27916 TCAACAATTTCTGTACACAGGTTGCTGCACTTGATCGTACCCAAGTTTTGCTGATTACTC 27857 Query 204944 TTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGATCGC 205003 || | |||||| | ||||| || | ||||| || | || ||||| | || | | Sbjct 27856 TTTCTGTTACAAGCATCCTTATAGAGTATGAATGGATTACCAGTCTCCGTTTGTGCCTCC 27797 Query 205004 AGAATGTGGGTCCACAATTCGCGAGCCTCCACTTGCTTCACGTACATC--CCTTGAGACT 205061 | |||| ||||| | |||||| | ||| ||| | ||| || |||| | | Sbjct 27796 AAAATGGCATACCACAGCTTTTGAGCCTTGA-TTGTTTCTC-TACCTCTTCCTTCACGTT 27739 Query 205062 CGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACATT 205121 |||||||| || || || ||||| || ||| | || || | || ||| || Sbjct 27738 CGTATTTTTCATAGAGAGCAACAAATTCGTCACCCCAGACTTCATGTAATCCAGGAGCTT 27679 Query 205122 TTTTGGGACACATCAGAGACCACATCTG-ATCGTCTTTCACCCTCTCCATAAACAGGTCG 205180 ||||| || | |||||||| ||| | ||||| | || | || ||| || || || Sbjct 27678 CATTGGGGCAAAATAGAGACCA-ATCACCACCGTCTCTGACACGCTGCATGAAAAGATCA 27620 Query 205181 CTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTTT 205240 | ||| || | || ||||||||||| || || ||| |||| | |||| ||| ||| Sbjct 27619 GGAACCCAGAGAGCATAGAACAGATCACGAGCTCTGATTTCGTCTTTACCAAAGTTTTTT 27560 Query 205241 TTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGCG 205300 |||||| | | | |||||| || ||||| || || || ||| || | |||| Sbjct 27559 CGCAAGTCTAAAAAGGTGAAAATGTCTGCATGCCAGGGTTCCAAGTACATTGCGAATGCG 27500 Query 205301 CCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAGC 205360 || || | ||| || || || || || || |||| | | ||||||||| || ||| Sbjct 27499 CCCGGACGCTTATTACCGCCTTGATCGACATAACGAGCCGTATTGTTGAAAACACGGAGC 27440 Query 205361 ATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCCCTC 205420 || |||| | ||||||| | ||||| |||| | ||| || || ||| | Sbjct 27439 ATGGGCAATAATCCGTTGGAGTAACCGTTGGTGCCGGCAATGTATGATCCACTAGCACGA 27380 Query 205421 ACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCACTCTTGC 205480 | |||| ||| | |||||| ||||| | ||||| ||| || || || || Sbjct 27379 ATGTTGTGAATGTTCAAGCCAATACCGCCTGCTGTCTTGGAGATTTGAGCACAGATTTTG 27320 Query 205481 AGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAGCACGAAGCC 205540 || || ||||| ||| |||| ||||| ||| || || | || | || |||| | Sbjct 27319 AGCGTCTCATAGATACCTTCGATCGAATCTTCCTTCATGGTGAGCAAGAAACAAGAAGAC 27260 Query 205541 AGCTTGGCA-AAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAAG 205594 | | || | || | ||||| || | || || || || || ||||| ||||| Sbjct 27259 ATTTGGGGACGAGGT-GTGCCTGCATTAAATAGAGTAGGACTAGCGTGTGTGAAG 27206 >seq328 Length=46411 Score = 107 bits (118), Expect = 3e-18 Identities = 143/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 203867 ACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTAC 203926 || ||||| || ||||| ||| |||||||| |||||||| ||||||| ||| | || Sbjct 25222 ACTGCAGGTCTAGATCTCAAATAATACATGCCAGTCTTTAGTCCCTTCTTCCAGGCATAA 25163 Query 203927 ATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGG 203986 | |||||| || | |||||||| | ||| || ||||| | | |||| ||| || Sbjct 25162 AAGTGCATAGAGGTCAGTTTGCCAAAGTTTGGTTCGGCAGTAAACAAATTCATAGATTGA 25103 Query 203987 CTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATAATGGTCTTCTGCGAAAT 204045 |||||| || |||||| || | || |||||||| | ||||| || | || ||||| Sbjct 25102 GATTGGTCAAT-AAAGGCTCCTCTGTCAGCGGCCATGTCAATAATAGTTCTTTGTGAAAT 25044 Query 204046 CTCCCACACCGTCTTG 204061 |||||| || |||||| Sbjct 25043 CTCCCATACTGTCTTG 25028 >seq228 Length=59556 Score = 104 bits (114), Expect = 4e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 203867 ACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTAC 203926 || ||||| || ||||| |||||||||||| ||||||| ||||||| ||| | || Sbjct 46527 ACTGCAGGTCTAGATCTCAAATAGTACATGCCAGTCTTTAATCCCTTCTTCCAGGCATAA 46468 Query 203927 ATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGG 203986 | |||||| || | ||| |||| | ||| || ||||| | | |||| ||| || Sbjct 46467 AAGTGCATAGAGGTCAGCTTGCCAAAGTTTGGTTCGGCAGTAAACAAATTCATAGATTGA 46408 Query 203987 CTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATC 204046 ||||||||| |||| | | ||| |||||||| | ||||| || | || |||||| Sbjct 46407 GATTGGTCGATAAAAGCTCCTCTATCAGCGGCCATGTCAATAATAGTTCTTTGTGAAATC 46348 Query 204047 TCCCACACCGTCTTG 204061 ||||| || || ||| Sbjct 46347 TCCCATACTGTTTTG 46333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795139754110240