Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F000825725.1_202014-12-08] 1,554 sequences; 49,238,270 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq71 122 9e-23 seq243 102 8e-17 seq862 91.5 1e-13 seq656 86.0 6e-12 >seq71 Length=102704 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || ||||| || || ||||| ||| | || || ||| || | Sbjct 21478 ATGCAAATCTTTGTCAAGACTCTCACTGGTAAGACCATTACCTTGGAGGTTGAGTCCTCT 21419 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || || | ||| | || |||| |||| || || || || ||||| | |||||| Sbjct 21418 GATAGTATTGAAAATGTCAAGCAAAAGATCCAAGATAAGGAAGGTATTCCTCCTGACCAA 21359 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || ||||||| ||| ||||| ||||| || || | || || | | ||||||||| Sbjct 21358 CAACGTCTCATTTTCGCCGGCAAGCAGCTTGAGGATGGCCGTACTTTGAGTGACTACAAC 21299 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||| | || || || ||||| || ||| | | ||||| Sbjct 21298 ATCCAAAAGGAATCTACCCTTCACTTGGTTCTCCGTCTTCGTGGCGG 21252 Score = 102 bits (112), Expect = 8e-17 Identities = 157/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 38236 TTaaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCG 38295 || ||||||||||||| |||||||| || || || ||||| || || || | || |||| Sbjct 21714 TTTAAAAAATGCAAATCTTCGTAAAGACTCTTACCGGCAAGACGATTACTTTAGAAGTCG 21655 Query 38296 AGGCCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCG 38355 | | | || || | ||| | || |||| || | ||||| || || || || Sbjct 21654 AATCTTCTGATAGTATCGAAAATGTCAAGCAAAAGATTCAAGACAAGGAAGGTATCCCTC 21595 Query 38356 CCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACG 38415 | ||||||||| | || || | || || ||||| || || || | || || | | | Sbjct 21594 CTGACCAACAGAGACTTATCTTTGCTGGTAAACAACTTGAGGATGGTCGTACTTTGAGTG 21535 Query 38416 ACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||||||||||| | || || || ||||| || ||| Sbjct 21534 ACTACAACATCCAAAAGGAATCTACCCTTCACTTGGTCCTTCGT 21491 >seq243 Length=56764 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || || || || || | || || | || |||||| | | Sbjct 38077 ATGCAAATCTTTGTCAAGACACTTACTGGAAAGATGATTACTTTAGAAGTCGAGTCTTCT 38018 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | ||| ||||||| | ||||| || || ||||| | || ||| Sbjct 38017 GACACTATCGACAATGTAAAACAAAAAATTCAAGACAAGGAAGGTATTCCTCCTGATCAA 37958 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || ||||| | || || ||||| || || || | || ||||| | |||||| ||| Sbjct 37957 CAACGTCTCATCTTTGCTGGTAAACAACTCGAAGATGGTCGTACCCTAAGCGACTATAAC 37898 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | || || |||||||| || ||| Sbjct 37897 ATCCAAAAGGAATCTACTCTTCATTTGGTCCTTCGT 37862 >seq862 Length=17893 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 132895 CAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAG 132954 ||||||||||| ||| | || || || | | || | ||| |||||||| ||||| Sbjct 17489 CAAGCAAAGTCAGTATGAAGACCTTCATCACGACAGATCAATTCATTGCTGAATGTCAAA 17430 Query 132955 CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAG 133014 |||||||| || || ||||||||||||||||| |||| || || || || |||||| Sbjct 17429 CCGGGCATCAGACCACGTTTTTTGAGCCAAAAGATGGAAGCAAAGGAACCAGAGAAGAAG 17370 Query 133015 ACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTC 133049 | || ||||| || || || || || || || || Sbjct 17369 ATACCTTCGACAGCAGCAAAGGCAACAAGACGTTC 17335 >seq656 Length=25916 Score = 86.0 bits (94), Expect = 6e-12 Identities = 213/321 (66%), Gaps = 2/321 (1%) Strand=Plus/Plus Query 132730 TCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGCACC 132789 ||||| ||||| ||||||||||| |||| | |||| | || | ||| || Sbjct 609 TCGGCAACGAATTCGATGTATTGGCACATCAAGGCAGAATTCATGCCGATGAGAGCAACG 668 Query 132790 GGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTA 132849 || || || || || | ||| || || ||| ||| || || || ||| ||| | Sbjct 669 GGAAGAGCATCCGTCAAAAATTCCTGTTCAATGCTGACAGCTTCCAAGATGATATCCTTG 728 Query 132850 ACGCGCGCCGCGCTCGGCCGTTGCACCAA-ATGCTTGAACATCAAGCAAGCAAAGTCGCA 132908 ||||| | ||| || || | || || ||| | || | | ||||||||||| Sbjct 729 ACGCGTTCTTGGCTAGGACGCTT-ACGAAGATGGGTAAATAAAAGACAAGCAAAGTCAGT 787 Query 132909 ATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCC 132968 ||| | ||| || || | | || | ||| |||||||| ||||| || ||||| | || Sbjct 788 ATGAAGGCCTTCATCACGACAGATCAATTCATTGCTGAATGTCAAACCAGGCATCAAACC 847 Query 132969 GCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGC 133028 ||||| ||||||||||| || | || || || || ||||||| || ||||| || Sbjct 848 ACGTTTCTTGAGCCAAAAAATAGAAGCAAAGGAACCAGAGAAGAAGATACCTTCGACAGC 907 Query 133029 CGCGAAAGCCACCAGGCGCTC 133049 || || || || || ||||| Sbjct 908 AGCAAAGGCAACAAGACGCTC 928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500163084143360