Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F000825725.1_202014-12-08] 1,554 sequences; 49,238,270 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq178 98.7 1e-15 >seq178 Length=68412 Score = 98.7 bits (108), Expect = 1e-15 Identities = 484/755 (64%), Gaps = 29/755 (4%) Strand=Plus/Plus Query 159046 TATCATAGTGAGACTGACATGATGAGATATATCTATGAGTTAGCATCAAAAGATTTCTCA 159105 ||||| |||||| || ||| | |||| || || | | | | || ||| |||| Sbjct 43248 TATCACTCTGAGACCGAGATGCTTCGATACATTCATCACCTCGAAAGCAAGGATCTCTCC 43307 Query 159106 TTAGTAAATGGTATGGTTCCACTTGGTAGTTGTACTATGAAACTAAACGCAGCATCAGAA 159165 || || || ||| |||| || || || |||||||||||| | ||||| || | ||| Sbjct 43308 TTGGTCCATTCCATGATTCCTCTCGGCAGCTGTACTATGAAATTGAACGCCACAACCGAA 43367 Query 159166 CTGATGCCTGTGTCATGGGAAGAGTTTGCTAACGTGCATCCACATACACCTAT-GATACA 159224 |||| ||||| | ||| || ||| | ||| | || ||| ||||| | ||| || Sbjct 43368 ATGATTCCTGTCACCTGGCCCGAATTTTCCAACATTCACCCATTCGCACCTGTTGAT-CA 43426 Query 159225 GACCATGGGTTATCAAAAAATTATAGATGA-CTTACAGAAATGGTTATGTGATATCACAG 159283 ||| ||||||| || | ||||| ||| |||| | | | || ||||| | Sbjct 43427 GACACGCGGTTATCTCGCCATGCTGGATGAGCTTGCAGATGACTTGAAG-GAAATCACTG 43485 Query 159284 GGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGT 159343 | |||||| | | || | ||||| || |||| | || ||||| || || || || Sbjct 43486 GCTTTGATGGTGTCTCTCTTCAACCCAATTCAGGCGCTCAAGGTGAATACGCTGGTCTTC 43545 Query 159344 TAGCAATCCAAGCATACCATCAAGGATCAGGAGATGATA---AAAGAAATGTATGTTTGA 159400 | || | || ||||| || | || | | ||| | | | ||||| ||||||| Sbjct 43546 GTGTCATTCGTGCCTACCACCATGC-TC--GTGGTGAAAGCCACCGTAATGTGTGTTTGA 43602 Query 159401 TACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGGATGAAAGTTG 159460 | || ||||| || || || || |||||||| |||| ||| || ||| | ||| Sbjct 43603 TCCCTATCTCAGCTCACGGCACCAACCCTGCATCTGCAGCCATGTGTGGTATGGACATTG 43662 Query 159461 TAGGTGTCAAGTGTGATGATGATGGCAACATAGACATCAAAGATCTAGAGAAGAAAGCAA 159520 | | ||||||| | || ||| | ||||| | ||| | |||||||| Sbjct 43663 TGATCATTCAGTGTGACAGCAAGGGTAACTTGGACATGGAGGATTT------GAAAGCAA 43716 Query 159521 T--CATGAA--TACATTTGAACTGTCATGT---ATTATGATTACATATCCATCTACACAT 159573 || || |||| || | | || || ||||| || ||||| |||| | Sbjct 43717 AGGCAGAAAAGTACAAG-GACCGATTGGGTGCTATCATGATCACGTATCCTAGTACATTT 43775 Query 159574 GGTGTATTTGAAACAAACATCAGACAGAT--ATGTAAGATTGTTCATGAGAATGGTGGTC 159631 ||| | |||||| || | | ||| ||| ||| | || || | | || |||| Sbjct 43776 GGTATGTTTGAAGCAGGTGTTT--CTGATGCATGCAAGGTCGTACACCAACACGGCGGTC 43833 Query 159632 AGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCATGTGACT 159691 || |||||||| ||||| || | ||||| ||| | ||| || | || || || Sbjct 43834 TCGTTTATCTTGACGGTGCCAACTTGAATGCCCAGATCGGTTTAACCAAGCCTGCAGAGA 43893 Query 159692 ATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTG 159751 ||||| || || ||||| | ||||| || ||||| ||||||||||| ||||| |||| Sbjct 43894 TCGGTGCTGACGTCTGTCACATGAACTTGCACAAGACCTTCTGTATTCCTCATGGTGGTG 43953 Query 159752 GAGGTCCTGGCGTAGGTCCTATTG-GTGTAGCAAA 159785 | || || || | || ||||| | |||| |||| Sbjct 43954 GTGGACCAGGTATGGGCCCTATCGCATGTACCAAA 43988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588039777105440