Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F000825725.1_202014-12-08] 1,554 sequences; 49,238,270 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq769 96.9 3e-15 seq71 96.9 3e-15 seq686 87.8 2e-12 seq243 82.4 6e-11 >seq769 Length=21522 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || ||| | || || || || ||||| ||| ||| |||| Sbjct 14069 ATGCAAATCTTTGTCAAGACACTTACTGGAAAGACAATTACTTTAGAAGTTGAATCTTCT 14128 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | || ||||| || ||||| || || | || |||||| Sbjct 14129 GACACTATCGACAATGTAAAACAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAA 14188 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 28731 || | || |||||||| || |||||| | |||||| || | ||| | ||| |||| Sbjct 14189 CAACGTCTCATCTTTGCTGGTAAACAACTCGAAGATGGTCGTACCCTAAG--CGACTATA 14246 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||||||||| ||||||||||| ||| |||| Sbjct 14247 ACATTCAAAAGGAATCTACTCTTCACTTGGT 14277 >seq71 Length=102704 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 28550 AAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACC 28609 |||||||||||| || ||||| || | || || || || ||||| ||| ||| | Sbjct 21710 AAAAATGCAAATCTTCGTAAAGACTCTTACCGGCAAGACGATTACTTTAGAAGTCGAATC 21651 Query 28610 TTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 ||| || | | | || |||||||||| || ||||| || || | || || Sbjct 21650 TTCTGATAGTATCGAAAATGTCAAGCAAAAGATTCAAGACAAGGAAGGTATCCCTCCTGA 21591 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 |||||||||||||||||||| || |||||| | || ||| | ||| || || || Sbjct 21590 CCAACAGAGACTTATCTTTGCTGGTAAACAACTTGAGGATGGTCGTACTTTGAGTGACTA 21531 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||||| ||||| |||||||| || ||| |||| Sbjct 21530 CAACATCCAAAAGGAATCTACCCTTCACTTGGT 21498 >seq686 Length=24674 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 28550 AAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACC 28609 |||||||||||| || ||||| || | || || || || ||||| ||| ||| | Sbjct 10545 AAAAATGCAAATCTTCGTAAAGACTCTTACCGGCAAGACAATTACTTTAGAAGTTGAATC 10604 Query 28610 TTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 ||| || | | | || |||||||||| || || || || || | || || Sbjct 10605 TTCTGATAGTATCGAAAATGTCAAGCAAAAGATTCAAGATAAGGAAGGTATCCCTCCTGA 10664 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 ||||| | || || || || || |||||| | ||||| | ||| || ||||| Sbjct 10665 CCAACAACGTCTCATTTTCGCTGGTAAACAACTCGAAGACGGTCGTACTTTGAGTGATTA 10724 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||||||||||||||||||||||| ||| |||| Sbjct 10725 TAACATTCAAAAAGAATCTACTCTTCACTTGGT 10757 >seq243 Length=56764 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || ||| | || || || | ||||| ||| || |||| Sbjct 38077 ATGCAAATCTTTGTCAAGACACTTACTGGAAAGATGATTACTTTAGAAGTCGAGTCTTCT 38018 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | || |||||||| ||||| || || | || |||||| Sbjct 38017 GACACTATCGACAATGTAAAACAAAAAATTCAAGACAAGGAAGGTATTCCTCCTGATCAA 37958 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 28731 || | || |||||||| || |||||| | |||||| || | ||| | ||| |||| Sbjct 37957 CAACGTCTCATCTTTGCTGGTAAACAACTCGAAGATGGTCGTACCCTAAG--CGACTATA 37900 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||| ||||| ||||||||||| || |||| Sbjct 37899 ACATCCAAAAGGAATCTACTCTTCATTTGGT 37869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425396743098966