Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F000825725.1_202014-12-08] 1,554 sequences; 49,238,270 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq769 127 4e-24 seq243 127 4e-24 seq71 118 2e-21 seq686 111 3e-19 >seq769 Length=21522 Score = 127 bits (140), Expect = 4e-24 Identities = 183/256 (71%), Gaps = 3/256 (1%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | | ||||| |||| || | |||| || || ||| ||| Sbjct 14304 ATTTGCATACCACCACGGAGACGAAGGACCAAGTGAAGAGTAGATTCCTTTTGAATGTTA 14245 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||| || || | | ||| || | |||||| || ||||| || | | |||||| Sbjct 14244 TAGTCGCTTAGGGTACGACCATCTTCGAGTTGTTTACCAGCAAAGATGAGACGTTGTTGA 14185 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 |||||||| || ||||| || ||||| || || ||||| ||| ||||| || ||| Sbjct 14184 TCAGGAGGAATACCTTCCTTGTCTTGAATCTTTTGTTTTACATTGTCGATAGTGTCAGAA 14125 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT--TT 193362 || |||||||||| ||| || || || || || || || || ||||| |||||||| | Sbjct 14124 GATTCAACTTCTAAAGTAATTGTCTTTCCAGTAAGTGTCTTGACAAAGATTTGCATGATG 14065 Query 193363 TA-TTAGTAAAATAAT 193377 || ||| |||||||| Sbjct 14064 TATTTATAAAAATAAT 14049 >seq243 Length=56764 Score = 127 bits (140), Expect = 4e-24 Identities = 182/256 (71%), Gaps = 3/256 (1%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | | ||||| |||| ||| | |||| || || || ||| Sbjct 37842 ATTTGCATACCACCACGGAGACGAAGGACCAAATGAAGAGTAGATTCCTTTTGGATGTTA 37901 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||| || || | | ||| || | |||||| || ||||| || | | |||||| Sbjct 37902 TAGTCGCTTAGGGTACGACCATCTTCGAGTTGTTTACCAGCAAAGATGAGACGTTGTTGA 37961 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 |||||||| || ||||| || ||||| ||||| ||||| ||| ||||| || ||| Sbjct 37962 TCAGGAGGAATACCTTCCTTGTCTTGAATTTTTTGTTTTACATTGTCGATAGTGTCAGAA 38021 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTA 193364 ||||| ||||||| ||| || | || || || || || || ||||| |||||||| || Sbjct 38022 GACTCGACTTCTAAAGTAATCATCTTTCCAGTAAGTGTCTTGACAAAGATTTGCATGATA 38081 Query 193365 ---TTAGTAAAATAAT 193377 ||| |||||||| Sbjct 38082 TATTTATAAAAATAAT 38097 >seq71 Length=102704 Score = 118 bits (130), Expect = 2e-21 Identities = 179/254 (70%), Gaps = 2/254 (1%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | | ||||| |||| || | |||| || || || || Sbjct 21471 ATTTGCATACCACCACGAAGACGAAGGACCAAGTGAAGGGTAGATTCCTTTTGGATGTTG 21530 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || || | | ||| || | |||||| || ||||| || | ||||||||| Sbjct 21531 TAGTCACTCAAAGTACGACCATCCTCAAGTTGTTTACCAGCAAAGATAAGTCTCTGTTGG 21590 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 |||||||| || ||||| || ||||| || || || | |||| ||| |||| ||| Sbjct 21591 TCAGGAGGGATACCTTCCTTGTCTTGAATCTTTTGCTTGACATTTTCGATACTATCAGAA 21650 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTA 193364 || || ||||||| ||| || || || || || || || ||||| || ||||||||||| Sbjct 21651 GATTCGACTTCTAAAGTAATCGTCTTGCCGGTAAGAGTCTTTACGAAGATTTGCATTTTT 21710 Query 193365 TTAGTA--AAATAA 193376 | | || |||||| Sbjct 21711 TAAATAAGAAATAA 21724 >seq686 Length=24674 Score = 111 bits (122), Expect = 3e-19 Identities = 165/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| |||| || | |||| ||||| ||| ||||| || || || | | Sbjct 10763 CGAAGAACCAAGTGAAGAGTAGATTCTTTTTGAATGTTATAATCACTCAAAGTACGACCG 10704 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | |||||| || || ||||| | | ||||| |||||||| || ||||| ||| Sbjct 10703 TCTTCGAGTTGTTTACCAGCGAAAATGAGACGTTGTTGGTCAGGAGGGATACCTTCCTTA 10644 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || || | |||| ||| |||| ||||| |||||||||| ||| || Sbjct 10643 TCTTGAATCTTTTGCTTGACATTTTCGATACTATCAGAAGATTCAACTTCTAAAGTAATT 10584 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTATTAGTA--AAATAA 193376 || || || || || || ||||| || ||||||||||| | | || |||||| Sbjct 10583 GTCTTGCCGGTAAGAGTCTTTACGAAGATTTGCATTTTTTAAATAAGAAATAA 10531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899636924213280