Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F000825725.1_202014-12-08] 1,554 sequences; 49,238,270 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq243 105 1e-17 seq686 104 3e-17 seq71 102 1e-16 >seq243 Length=56764 Score = 105 bits (116), Expect = 1e-17 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || ||| | |||||||| | ||||| ||||||||||| |||| Sbjct 38077 ATGCAAATCTTTGTCAAGACACTTACTGGAAAGATGATTACTTTAGAAGTCGAGTCTTCT 38018 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || ||| | ||||| ||||| || ||||| || ||||| || ||| Sbjct 38017 GACACTATCGACAATGTAAAACAAAAAATTCAAGACAAGGAAGGTATTCCTCCTGATCAA 37958 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||| | | || | ||| ||||| || ||||||||| Sbjct 37957 CAACGTCTCATCTTTGCTGGTAAACAACTCGAAGAT 37922 >seq686 Length=24674 Score = 104 bits (114), Expect = 3e-17 Identities = 124/167 (74%), Gaps = 1/167 (1%) Strand=Plus/Plus Query 155811 TTATGTAATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAA 155870 |||| ||| ||||||||||| || | || || | || || || || ||||| |||||| Sbjct 10538 TTATTTAA-AAAATGCAAATCTTCGTAAAGACTCTTACCGGCAAGACAATTACTTTAGAA 10596 Query 155871 GTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATA 155930 || ||| |||||||| ||| ||| || || | || || |||||||| ||||| || Sbjct 10597 GTTGAATCTTCTGATAGTATCGAAAATGTCAAGCAAAAGATTCAAGATAAGGAAGGTATC 10656 Query 155931 CCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 ||||| || |||||| | | |||| || ||||| || |||||||| Sbjct 10657 CCTCCTGACCAACAACGTCTCATTTTCGCTGGTAAACAACTCGAAGA 10703 >seq71 Length=102704 Score = 102 bits (112), Expect = 1e-16 Identities = 124/168 (74%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 155811 TTATGTAATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAA 155870 |||| ||| ||||||||||| || | || || | || || || || ||||| |||||| Sbjct 21717 TTATTTAA-AAAATGCAAATCTTCGTAAAGACTCTTACCGGCAAGACGATTACTTTAGAA 21659 Query 155871 GTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATA 155930 |||||| |||||||| ||| ||| || || | || || ||||| || ||||| || Sbjct 21658 GTCGAATCTTCTGATAGTATCGAAAATGTCAAGCAAAAGATTCAAGACAAGGAAGGTATC 21599 Query 155931 CCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||||| || ||||| ||| | || | ||| ||||| || || || ||| Sbjct 21598 CCTCCTGACCAACAGAGACTTATCTTTGCTGGTAAACAACTTGAGGAT 21551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731857783386400