Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F000825725.1_202014-12-08] 1,554 sequences; 49,238,270 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq769 156 3e-33 seq243 150 1e-31 seq686 138 9e-28 seq439 102 6e-17 seq175 102 6e-17 seq80 89.7 4e-13 >seq769 Length=21522 Score = 156 bits (172), Expect = 3e-33 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| ||||| || ||||| |||||||||||||| || | ||| ||| Sbjct 14284 ACGAAGGACCAAGTGAAGAGTAGATTCCTTTTGAATGTTATAGTCGCTTAGGGTACGACC 14225 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| ||||||||||| |||||| | || | | ||| ||||| || |||||||| || || Sbjct 14224 ATCTTCGAGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGAGGAATACCTTCCTT 14165 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | |||||||| ||| | || | |||||||||| ||| ||||| | ||| || Sbjct 14164 GTCTTGAATCTTTTGTTTTACATTGTCGATAGTGTCAGAAGATTCAACTTCTAAAGTAAT 14105 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || ||||| | || || ||||| || ||||| Sbjct 14104 TGTCTTTCCAGTAAGTGTCTTGACAAAGATTTGCAT 14069 >seq243 Length=56764 Score = 150 bits (166), Expect = 1e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||||||||| || ||||| ||||| |||||||| || | ||| ||| Sbjct 37862 ACGAAGGACCAAATGAAGAGTAGATTCCTTTTGGATGTTATAGTCGCTTAGGGTACGACC 37921 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| ||||||||||| |||||| | || | | ||| ||||| || |||||||| || || Sbjct 37922 ATCTTCGAGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGAGGAATACCTTCCTT 37981 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | ||||||||| ||| | || | |||||||||| || ||||| | ||| || Sbjct 37982 GTCTTGAATTTTTTGTTTTACATTGTCGATAGTGTCAGAAGACTCGACTTCTAAAGTAAT 38041 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || ||||| | || || ||||| || ||||| Sbjct 38042 CATCTTTCCAGTAAGTGTCTTGACAAAGATTTGCAT 38077 >seq686 Length=24674 Score = 138 bits (152), Expect = 9e-28 Identities = 164/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAG 29629 ||| || ||||| ||||| || ||||||||||||||||||||||| | ||| | | ||| Sbjct 10764 ACGAAGAACCAAGTGAAGAGTAGATTCTTTTTGAATGTTATAATCACTCAAAG-TACGAC 10706 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 || ||||||||||| ||||| | || | | ||| || || || || ||||| || | Sbjct 10705 CGTCTTCGAGTTGTTTACCAGCGAAAATGAGACGTTGTTGGTCAGGAGGGATACCTTCCT 10646 Query 29690 TGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 | ||||| | ||||| |||||| |||| | | | |||||| ||| ||||| | ||| | Sbjct 10645 TATCTTGAATCTTTTGCTTGACATTTTCGATACTATCAGAAGATTCAACTTCTAAAGTAA 10586 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 | || ||||| || | || || || || || |||||||| Sbjct 10585 TTGTCTTGCCGGTAAGAGTCTTTACGAAGATTTGCATTTT 10546 >seq439 Length=37054 Score = 102 bits (112), Expect = 6e-17 Identities = 120/160 (75%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAG 29629 ||| || ||||| ||||| || ||||| ||||||||||| ||||| | ||| ||| ||| Sbjct 23589 ACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCACTCAA-GGTACGAC 23531 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 || ||||||||||| || || | || | | ||| ||||| || || ||||| || | Sbjct 23530 CGTCTTCGAGTTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGGATACCTTCCT 23471 Query 29690 TGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGA 29729 | ||||| | ||||| |||||| | || | |||||||| Sbjct 23470 TATCTTGGATCTTTTGCTTGACATTGTCAATGGTGTCAGA 23431 >seq175 Length=68572 Score = 102 bits (112), Expect = 6e-17 Identities = 120/160 (75%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAG 29629 ||| || ||||| ||||| || ||||| ||||||||||| ||||| | ||| ||| ||| Sbjct 14539 ACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCACTCAA-GGTACGAC 14481 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 || ||||||||||| || || | || | | ||| ||||| || || ||||| || | Sbjct 14480 CGTCTTCGAGTTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGGATACCTTCCT 14421 Query 29690 TGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGA 29729 | ||||| | ||||| |||||| | || | |||||||| Sbjct 14420 TATCTTGGATCTTTTGCTTGACATTGTCAATGGTGTCAGA 14381 >seq80 Length=97372 Score = 89.7 bits (98), Expect = 4e-13 Identities = 118/161 (73%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAG 29629 ||| || || || || || || ||||| ||||| |||||||| || | ||| ||| ||| Sbjct 13659 ACGGAGAACTAAGTGGAGAGTAGATTCCTTTTGGATGTTATAGTCGCTCAA-GGTACGAC 13717 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 || ||||||||||| || ||| | || | | ||| || || || |||||||| || | Sbjct 13718 CGTCTTCGAGTTGTTTACCGGCAAAGATAAGACGTTGTTGGTCAGGAGGAATACCTTCCT 13777 Query 29690 TGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAA 29730 ||||||| | ||||| ||||| | || | ||||| ||| Sbjct 13778 TGTCTTGAATCTTTTGCTTGACGTTGTCAATGGTGTCGGAA 13818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385211904189114