Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F000825725.1_202014-12-08] 1,554 sequences; 49,238,270 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq686 190 4e-43 seq769 179 7e-40 seq71 172 1e-37 seq243 170 4e-37 seq80 125 1e-23 seq439 122 2e-22 seq175 122 2e-22 seq83 93.3 8e-14 >seq686 Length=24674 Score = 190 bits (210), Expect = 4e-43 Identities = 174/220 (79%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| ||||| ||||| |||||||||||||| || || ||||||||| | | | | ||| Sbjct 10764 ACGAAGAACCAAGTGAAGAGTAGATTCTTTTTGAATGTTATAATCACTCAAAGTACGACC 10705 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 |||||| |||||||| ||||| || || || | |||||| || ||||| || |||||||| Sbjct 10704 GTCTTCGAGTTGTTTACCAGCGAAAATGAGACGTTGTTGGTCAGGAGGGATACCTTCCTT 10645 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||||||||||| || |||||||| || ||||| || ||| ||||| ||||| || Sbjct 10644 ATCTTGAATCTTTTGCTTGACATTTTCGATACTATCAGAAGATTCAACTTCTAAAGTAAT 10585 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 |||||||| || | |||||||| || || |||||| || Sbjct 10584 TGTCTTGCCGGTAAGAGTCTTTACGAAGATTTGCATTTTT 10545 >seq769 Length=21522 Score = 179 bits (198), Expect = 7e-40 Identities = 179/232 (77%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || ||||| ||||||||||| || || || ||||| || Sbjct 14297 TACCACCACGGAGACGAAGGACCAAGTGAAGAGTAGATTCCTTTTGAATGTTATAGTCGC 14238 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | ||| ||||| |||||||| ||||||||||| || | ||||||||| |||| Sbjct 14237 TTAGGGTACGACCATCTTCGAGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGAG 14178 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| |||||||||||| ||||||||| || || || ||| || ||| | Sbjct 14177 GAATACCTTCCTTGTCTTGAATCTTTTGTTTTACATTGTCGATAGTGTCAGAAGATTCAA 14118 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 |||| ||||| || ||||| || || | ||||| ||||| || ||||| || Sbjct 14117 CTTCTAAAGTAATTGTCTTTCCAGTAAGTGTCTTGACAAAGATTTGCATGAT 14066 >seq71 Length=102704 Score = 172 bits (190), Expect = 1e-37 Identities = 178/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || ||||| || |||||||| || || || || || ||| Sbjct 21478 TACCACCACGAAGACGAAGGACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCAC 21537 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | ||| || || |||||||| ||||||||||| ||||| ||||| || |||| Sbjct 21538 TCAAAGTACGACCATCCTCAAGTTGTTTACCAGCAAAGATAAGTCTCTGTTGGTCAGGAG 21597 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| |||||||||||| || |||||||| || ||||| || ||| | Sbjct 21598 GGATACCTTCCTTGTCTTGAATCTTTTGCTTGACATTTTCGATACTATCAGAAGATTCGA 21657 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 |||| ||||| ||||||||||| || | |||||||| || || |||||| || Sbjct 21658 CTTCTAAAGTAATCGTCTTGCCGGTAAGAGTCTTTACGAAGATTTGCATTTTT 21710 Score = 123 bits (136), Expect = 5e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| ||||| ||||| || |||||||| || || || || || ||| | | | | || Sbjct 21263 ACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCACTCAAAGTACGGCC 21322 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || || || || || || || || || | |||||| || ||||| || |||||||| Sbjct 21323 ATCCTCAAGCTGCTTGCCGGCGAAAATGAGACGTTGTTGGTCAGGAGGAATACCTTCCTT 21382 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 |||||| |||||| || ||||||||||| ||||| | || || ||||| || || Sbjct 21383 ATCTTGGATCTTTTGCTTGACATTTTCAATACTATCAGAGGACTCAACCTCCAAGGTAAT 21442 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || | ||||| ||||| || ||||| Sbjct 21443 GGTCTTACCAGTGAGAGTCTTGACAAAGATTTGCAT 21478 >seq243 Length=56764 Score = 170 bits (188), Expect = 4e-37 Identities = 182/239 (76%), Gaps = 1/239 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || || || ||||||||||| || || || ||||| || Sbjct 37849 TACCACCACGGAGACGAAGGACCAAATGAAGAGTAGATTCCTTTTGGATGTTATAGTCGC 37908 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | ||| ||||| |||||||| ||||||||||| || | ||||||||| |||| Sbjct 37909 TTAGGGTACGACCATCTTCGAGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGAG 37968 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| |||||||| ||| ||||||||| || || || ||| || || | Sbjct 37969 GAATACCTTCCTTGTCTTGAATTTTTTGTTTTACATTGTCGATAGTGTCAGAAGACTCGA 38028 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATATTT 82820 |||| ||||| ||| |||| || || | ||||| ||||| || ||||| | ||||||| Sbjct 38029 CTTCTAAAGTAATCATCTTTCCAGTAAGTGTCTTGACAAAGATTTGCATGA-TATATTT 38086 Score = 87.8 bits (96), Expect = 4e-12 Identities = 139/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 82615 TAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAG 82674 ||||||| | || || ||||| ||| ||| | ||| | ||| |||||||| |||| Sbjct 37654 TAGATTCACTTTGGATGTTATATTCATTCAGAGTATGACCATTTTCGAGTTGTTTGCCAG 37713 Query 82675 CAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTT- 82733 ||||||||| | |||||||| || || || |||| | |||||||| ||| ||||| Sbjct 37714 CAAAGATTAAACGTTGTTGATTTGACGGAATGTCTTCTCTTTCTTGAAT-TTTACTTTTC 37772 Query 82734 ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTC 82793 | | | |||| |||||| | | ||||| || | || ||| | || | | ||| Sbjct 37773 ATAATATCAACGGTATCAGATGAGTTGACTTCTAACGAAATTGTCGTTCCAGCAAGTGTC 37832 Query 82794 TTTACAAATATCTGCAT 82810 || |||||||| ||||| Sbjct 37833 TTGACAAATATTTGCAT 37849 >seq80 Length=97372 Score = 125 bits (138), Expect = 1e-23 Identities = 129/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| ||||||||||| ||||||||||| || || || ||||| || Sbjct 13646 TACCACCACGAAGACGGAGAACTAAGTGGAGAGTAGATTCCTTTTGGATGTTATAGTCGC 13705 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | ||||||||| |||||||| || |||||||| || | |||||| || |||| Sbjct 13706 TCAAGGTACGACCGTCTTCGAGTTGTTTACCGGCAAAGATAAGACGTTGTTGGTCAGGAG 13765 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATC 82750 | || |||||||| |||||||||||| || || || ||||| || || Sbjct 13766 GAATACCTTCCTTGTCTTGAATCTTTTGCTTGACGTTGTCAATGGTGTC 13814 >seq439 Length=37054 Score = 122 bits (134), Expect = 2e-22 Identities = 129/170 (76%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| ||||| ||||| || |||||||| || || || || |||||| Sbjct 23602 TACCACCACGAAGACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCAC 23543 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | ||||||||| |||||||| || || || || || | ||||||||| |||| Sbjct 23542 TCAAGGTACGACCGTCTTCGAGTTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAG 23483 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCA 82751 | || |||||||||||||| |||||| || ||||| ||||| || ||| Sbjct 23482 GGATACCTTCCTTATCTTGGATCTTTTGCTTGACATTGTCAATGGTGTCA 23433 >seq175 Length=68572 Score = 122 bits (134), Expect = 2e-22 Identities = 129/170 (76%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| ||||| ||||| || |||||||| || || || || |||||| Sbjct 14552 TACCACCACGAAGACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCAC 14493 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | ||||||||| |||||||| || || || || || | ||||||||| |||| Sbjct 14492 TCAAGGTACGACCGTCTTCGAGTTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAG 14433 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCA 82751 | || |||||||||||||| |||||| || ||||| ||||| || ||| Sbjct 14432 GGATACCTTCCTTATCTTGGATCTTTTGCTTGACATTGTCAATGGTGTCA 14383 >seq83 Length=96909 Score = 93.3 bits (102), Expect = 8e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 82652 ACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTC 82711 ||||||||| |||||||| || |||||||| || | |||||| || ||||| || ||||| Sbjct 41954 ACCGTCTTCGAGTTGTTTACCGGCAAAGATAAGACGTTGTTGGTCAGGAGGAATACCTTC 42013 Query 82712 CTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATC 82750 ||| |||||||||||| || || || ||||| || || Sbjct 42014 CTTGTCTTGAATCTTTTGCTTGACGTTGTCAATGGTGTC 42052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981807651206806