Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F000825725.1_202014-12-08] 1,554 sequences; 49,238,270 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq71 105 6e-18 seq686 96.9 3e-15 seq439 86.0 6e-12 seq175 86.0 6e-12 >seq71 Length=102704 Score = 105 bits (116), Expect = 6e-18 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| || || || || || ||||| || | || || | | | ||||| || Sbjct 21273 AAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCACTCAAAGTACGGCCA-TCCTCAAG 21331 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| ||| ||||||| || || ||||| ||||| || |||||||| || ||| Sbjct 21332 CTGCTTGCCGGCGAAAATGAGACGTTGTTGGTCAGGAGGAATACCTTCCTTATCTTGGAT 21391 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||||||||||| | |||| | || | || ||| || || | ||| | ||| || || Sbjct 21392 CTTTTGCTTGACATTTTCAATACTATCAGAGGACTCAACCTCCAAGGTAATGGTCTTACC 21451 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| || || || || ||||| Sbjct 21452 AGTGAGAGTCTTGACAAAGATTTGCAT 21478 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| || || || || || ||||| || | || || ||| | ||||| || Sbjct 21501 AAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCACTCAAAGTACGACCA-TCCTCAAG 21559 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || || || || | || || | ||| ||||| |||||||| ||||||||||| || Sbjct 21560 TTGTTTACCAGCAAAGATAAGTCTCTGTTGGTCAGGAGGGATACCTTCCTTGTCTTGAAT 21619 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||||||||||| | || | | || | | || || || | || | || ||||| Sbjct 21620 CTTTTGCTTGACATTTTCGATACTATCAGAAGATTCGACTTCTAAAGTAATCGTCTTGCC 21679 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| ||||| |||||||| || ||||| Sbjct 21680 GGTAAGAGTCTTTACGAAGATTTGCAT 21706 >seq686 Length=24674 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 || || ||||| || || || ||||| | || || |||| ||| ||||| || || | Sbjct 10745 GTAGATTCTTTTTGAATGTTATAATCACTCAAAGT--ACGACCGTCTTCGAGTTGTTTAC 10688 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| ||||||| || || ||||| |||||||| |||||||| || |||||||||| Sbjct 10687 CAGCGAAAATGAGACGTTGTTGGTCAGGAGGGATACCTTCCTTATCTTGAATCTTTTGCT 10628 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | | || | | || || || | || | || |||||||| |||| Sbjct 10627 TGACATTTTCGATACTATCAGAAGATTCAACTTCTAAAGTAATTGTCTTGCCGGTAAGAG 10568 Query 133642 TTTTTACGAAAATCTGCAT 133660 | |||||||| || ||||| Sbjct 10567 TCTTTACGAAGATTTGCAT 10549 >seq439 Length=37054 Score = 86.0 bits (94), Expect = 6e-12 Identities = 109/148 (74%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512 || || | ||| || || || || || |||||||| | || || |||| ||| |||| Sbjct 23579 AAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCACTCAAGGT--ACGACCGTCTTCGA 23522 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 | || || || ||| ||||||| || || || || |||||||| |||||||| || || Sbjct 23521 GTTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGGATACCTTCCTTATCTTGGA 23462 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTC 133600 |||||||||||| | |||| ||||| Sbjct 23461 TCTTTTGCTTGACATTGTCAATGGTGTC 23434 >seq175 Length=68572 Score = 86.0 bits (94), Expect = 6e-12 Identities = 109/148 (74%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512 || || | ||| || || || || || |||||||| | || || |||| ||| |||| Sbjct 14529 AAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCACTCAAGGT--ACGACCGTCTTCGA 14472 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 | || || || ||| ||||||| || || || || |||||||| |||||||| || || Sbjct 14471 GTTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGGATACCTTCCTTATCTTGGA 14412 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTC 133600 |||||||||||| | |||| ||||| Sbjct 14411 TCTTTTGCTTGACATTGTCAATGGTGTC 14384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483411409550960