Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F000825725.1_202014-12-08] 1,554 sequences; 49,238,270 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq656 132 1e-25 seq862 116 9e-21 seq228 107 5e-18 seq281 100 7e-16 seq4 87.8 4e-12 seq363 84.2 5e-11 seq284 84.2 5e-11 >seq656 Length=25916 Score = 132 bits (146), Expect = 1e-25 Identities = 361/548 (66%), Gaps = 16/548 (3%) Strand=Plus/Minus Query 131468 TATAAGAAATCTGTTGCGGCCTTCTGGACTGTTGAAGAGATCGATATGACCAAAGATATT 131527 ||||||||| ||| || |||| ||||| | |||||| |||||| ||| ||| || || Sbjct 1315 TATAAGAAAGCTGAAGCTTCCTTTTGGACAGCTGAAGAAATCGATTTGAGCAAGGACCTT 1256 Query 131528 GATGATTGGGAAAAATTAACCTTGAATGAAAAAGAT------TTTGTTTCCAAAGTTCTT 131581 ||||||||||||| | ||| |||||| || ||| | || || | Sbjct 1255 CATGATTGGGAAAACAAGA---TGACTGAAAACGAACGCTTCTTTATCTCTCGCGTCTTG 1199 Query 131582 GCATTCTTCGCCGGAAGTGATGGCATTGTTATTGAAAATCTTGTTATTAATTTCATTCAA 131641 || ||||| || || ||||||||||||| |||||| | ||| || || | | Sbjct 1198 GCCTTCTTTGCTGGTTCAGATGGCATTGTTAATGAAAACTTGGTTCAAAACTTTTGTGAT 1139 Query 131642 GAAATTGATATTCCTGAAGTAACATCGTTCTACACATTTCAAGCCGCTGTTGAATCTATT 131701 ||| | | |||||||||| | || ||||| |||||| | ||||| ||| Sbjct 1138 GAAGTCAAGATTCCTGAAGCTAAATGTTTCTATGGCTTTCAAATCATGATTGAAAACATT 1079 Query 131702 CATAGCGAGATGTATTCATTATTGATTGAGAGTCTTGTTAAAAATGAAGATGATAAAAAT 131761 || || | || | |||||||| | | | | ||| || | | || ||| | Sbjct 1078 CACGCAGAAACTTACAGTCTTTTGATTGACACTTATATCAAAGATAATCAAGAGAAAGAA 1019 Query 131762 AAATTATTTGATGCTGTAAATAA-ATTTCCTGCAATTAAAAAGAAAG-CAGAATGGGCTA 131819 | ||||| |||| | | | || |||| | | ||||||||| | || ||||| Sbjct 1018 ATGCTATTTTCTGCTATTGACACTATCCCCTGTA--TCAAAAGAAAGGCTGATTGGGCCT 961 Query 131820 TTAAATGGATTCAAGATGATTCCGCTAATTTTTCTACAAGACTTGTAGCTTTTGCTTGTG 131879 | || |||||| | | || | |||| || | ||||| || |||||| || Sbjct 960 TCAAGTGGATTTCCTCTAA---CGGTTCTTTTGCTGAGCGTCTTGTTGCCTTTGCTGCTG 904 Query 131880 TTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGGCTTAAGAAGCGTGGAT 131939 | |||||||| ||||| || ||| | || | |||| |||||||| ||||| ||||| | Sbjct 903 TCGAAGGTATCTTCTTCTCTGGTTCCTTTGCTTCTATTTTTTGGCTCAAGAAACGTGGTT 844 Query 131940 TGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAAGCATTGCATACTG 131999 |||||||||| | |||| |||| |||| |||| | ||||||| | ||||||| Sbjct 843 TGATGCCTGGTTTGACATTCAGCAATGAATTGATCTGTCGTGATGAAGGCCTTCATACTG 784 Query 132000 AATTTGCT 132007 | |||||| Sbjct 783 ACTTTGCT 776 >seq862 Length=17893 Score = 116 bits (128), Expect = 9e-21 Identities = 354/546 (65%), Gaps = 12/546 (2%) Strand=Plus/Plus Query 131468 TATAAGAAATCTGTTGCGGCCTTCTGGACTGTTGAAGAGATCGATATGACCAAAGATATT 131527 ||||||||| ||| || |||| ||||| | |||||| |||||| ||| ||| || || Sbjct 16948 TATAAGAAAGCTGAAGCTTCCTTTTGGACAGCTGAAGAAATCGATTTGAGCAAGGACCTT 17007 Query 131528 GATGATTGGGAAAAATTAACCTTGAATGAAAAAGAT------TTTGTTTCCAAAGTTCTT 131581 ||||||||||||| | ||| ||||| || ||| | || ||| | Sbjct 17008 CATGATTGGGAAAACAAGA---TGACCGAAAACGAACGTTTCTTTATCTCTCGCGTTTTG 17064 Query 131582 GCATTCTTCGCCGGAAGTGATGGCATTGTTATTGAAAATCTTGTTATTAATTTCATTCAA 131641 || ||||| || || ||||||||||||| |||||| | ||| || || | | Sbjct 17065 GCCTTCTTTGCTGGTTCAGATGGCATTGTTAATGAAAACTTGGTTCAAAACTTTTGTGAT 17124 Query 131642 GAAATTGATATTCCTGAAGTAACATCGTTCTACACATTTCAAGCCGCTGTTGAATCTATT 131701 ||| | | |||||||||| | || ||||| |||||| | ||||| |||| Sbjct 17125 GAAGTCAAGATTCCTGAAGCTAAATGTTTCTATGGCTTTCAAATCATGATTGAAAATATT 17184 Query 131702 CATAGCGAGATGTATTCATTATTGATTGAGAGTCTTGTTAAAAATGAAGATGATAAAAAT 131761 || || | || | |||||||| | | | | ||| | | | || ||| | Sbjct 17185 CACGCAGAAACTTACAGTCTTTTGATTGACACTTATATCAAAGACAACCAAGAGAAAGAA 17244 Query 131762 AAATTATTTGATGCTGTAAATAAATTTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATT 131821 | | ||| |||| | | | | ||| || || | || || || ||||| | Sbjct 17245 ATGCTCTTTTCTGCTATTGACACTATCCCTTGTATCAAGAGAAAGGCTGATTGGGCCTTC 17304 Query 131822 AAATGGATTCAAGATGATTCCGCTAATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTT 131881 ||||||||| | | || | |||| || | | ||||| || |||||| ||| Sbjct 17305 AAATGGATTTCCTCTAA---CGGTTCTTTTGCTGAACGTCTTGTTGCCTTTGCTGCTGTC 17361 Query 131882 GAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTG 131941 |||||||| ||||| || ||| | || | | ||||||||||| || || ||||| || Sbjct 17362 GAAGGTATCTTCTTCTCTGGTTCCTTTGCTTCCATCTTTTGGCTCAAAAAACGTGGTCTG 17421 Query 131942 ATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAAGCATTGCATACTGAA 132001 ||||| || | |||| |||| |||| |||| | ||||||| | |||||||| Sbjct 17422 ATGCCCGGTTTGACATTCAGCAATGAATTGATCTGTCGTGATGAAGGTCTTCATACTGAC 17481 Query 132002 TTTGCT 132007 |||||| Sbjct 17482 TTTGCT 17487 >seq228 Length=59556 Score = 107 bits (118), Expect = 5e-18 Identities = 341/522 (65%), Gaps = 15/522 (3%) Strand=Plus/Plus Query 110294 TGATATTGACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGG 110353 |||| || ||| ||||| || ||||| | |||||| ||| || | ||||| Sbjct 44503 TGATTTTAACTTCTTTGGCTTTAAAACGTTAGAACGTAGTTACTTGTTAAAGATCAATAA 44562 Query 110354 CGAGATCATTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACA 110413 ||| ||| ||||||| ||||| ||||| | | |||||||| ||||| ||||| || | Sbjct 44563 CGAAATCGTTGAACGACCTCAGTACATGATCATGCGTGTTGCTATTGGCATTCACGGTAA 44622 Query 110414 TGATATT-AAAGCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTAT--TCA 110470 ||| | ||||| | ||| | ||||| | || || | || || | ||| Sbjct 44623 TGACCTAGAAAGCGCCTTCAGAACCT-ATGATCT--TATGTCATCTAAATACTTTACTCA 44679 Query 110471 TGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCT 110530 |||||| ||||| | || ||||| || || | | |||||| || ||| || || Sbjct 44680 TGCTACACCTACATTGTTCAACGCTGGTACACCTAAACCTCAATTGTCTAGTTGTTTCCT 44739 Query 110531 TCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCT 110590 | | ||| || || || ||| ||||| || || ||| || | | ||||| Sbjct 44740 TGTTCAAATGAAAGAGGACAGTATCGAAGGCATCTACGATACTATCACCACGTGTGCTCG 44799 Query 110591 TATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCG---CTCAAAAGG 110647 ||| || || |||| || |||| || | ||| | ||||| ||| || Sbjct 44800 TATCTCCAAGTCTGCTGGCGGTGTTGGCGTTGCTGCTCAAAAGATTCGTGGCTCT---GG 44856 Query 110648 AGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTT 110707 | |||||||| | | || || | || | ||| || |||||||| | |||||||| Sbjct 44857 CTCTTATATCGCAGGAACAAACGGCACCTCCAATGGCATTATTCCAATGCTCAGAGTCTT 44916 Query 110708 CAACGACACTGCAAAATATGTGAATCAAGG---TGGTAAGAGAAATGGCTCATTTGCTAT 110764 || |||||||| | ||||| ||||| |||||| | || || |||||| | Sbjct 44917 TAATGACACTGCTCGCTTTGTGACACAAGGAGGTGGTAAACGCAACGGTAACTTTGCTGT 44976 Query 110765 CTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGA 110806 |||| | |||||||||||| ||| |||| |||||||| || Sbjct 44977 CTATATAGAACCTTGGCATGTCGATGTATTCGAATTCTTGGA 45018 >seq281 Length=51216 Score = 100 bits (110), Expect = 7e-16 Identities = 157/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 72169 ACTTTGCCAAACACAACGTGTTTGTTATTTAAATGTGGTTGAGGTGCAAGTGTAATGAAG 72228 ||||| |||||||| || || ||| || ||||||||| ||| || |||||| ||| Sbjct 42795 ACTTTACCAAACACGACATGCTTGCCATCCAAATGTGGTGTAGGAACAGTTGTAATAAAG 42736 Query 72229 AATTGCGAGTTATTTGAATCAGGACCCGAGTTAGCCATAGAAACCAAACCTGCTTCTGAA 72288 ||||| || ||||| |||| || | ||| ||||| || | ||| || || | Sbjct 42735 AATTGAGATCCATTTGTTCCAGGGCCAGCGTTTGCCATGGATAACAAGAATGGTTTGTCA 42676 Query 72289 TGCTTTAATAAGAAATTCTCATCTTCAAAAGTTTCTCCATATATACTTTGACCTGAGCTT 72348 ||||||||| || || ||||||||||| |||| ||||| ||| || ||| | Sbjct 42675 TGCTTTAATTCAAAGTTTTCATCTTCAAACTTTTCACCATAAATAGATTCACCGCCTGTA 42616 Query 72349 CCATCA-AAGTTCACAATATCACCTCCTTGAACCATAAAATT 72389 || | | || | || |||||| ||||||||||||||||| Sbjct 42615 CCGTTACCAGCT-GTAAAATCACCACCTTGAACCATAAAATT 42575 >seq4 Length=220966 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 148318 ACCCTATCTGGGGATCGAACCCAGAATCTTCCGCTTAGAAGGCGGACGCGATATCCAATT 148377 |||| || |||| |||||||| ||||||||||||||||||||||||| ||||||||| Sbjct 61001 ACCCAATGCGGGGGTCGAACCCGCAATCTTCCGCTTAGAAGGCGGACGCCGTATCCAATT 61060 Query 148378 TCGCCAATAGGGC 148390 | |||||| |||| Sbjct 61061 TGGCCAATCGGGC 61073 >seq363 Length=42998 Score = 84.2 bits (92), Expect = 5e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 305318 GACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCT 305377 || |||||| || |||||||| | ||||| || || || | | | || || |||||| Sbjct 8509 GATAATGATGTCGTCTTGTTCAATCGTCAACCTTCGCTTCACAGATTATCCATCATGGCT 8568 Query 305378 CATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCT 305437 || | ||| ||| | || | || || |||| || | | ||| ||| ||||| Sbjct 8569 CACTTTGCCAAGGTAATGCCTTGGAGAACGTTCAGATTCAACGAATGTGTCTGTTCGCCT 8628 Query 305438 TATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 ||||| || |||||||| || ||||||||||||||||| | || ||| || Sbjct 8629 TATAACGCTGATTTTGACGGTGATGAAATGAATATGCACTTGCCACAAACA 8679 >seq284 Length=51102 Score = 84.2 bits (92), Expect = 5e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 305318 GACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCT 305377 || |||||| || |||||||| | || || || || || | | | || || |||||| Sbjct 46285 GATAATGATGTCGTCTTGTTCAATCGTCAGCCTTCGCTTCACAGATTATCCATCATGGCT 46344 Query 305378 CATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCT 305437 || | ||| || | || | ||||| |||| || | | ||| ||| ||||| Sbjct 46345 CACTTTGCCAAGGTGATGCCTTGGAGAACATTCAGATTCAACGAATGTGTCTGTTCGCCT 46404 Query 305438 TATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 |||||||| |||||||| || ||||||||||||||||| | || ||| || Sbjct 46405 TATAATGCTGATTTTGACGGTGATGAAATGAATATGCACTTGCCACAAACA 46455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186789169815394