Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F000825725.1_202014-12-08] 1,554 sequences; 49,238,270 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq243 125 7e-24 seq769 116 4e-21 seq815 113 4e-20 seq71 107 2e-18 seq291 105 6e-18 seq686 104 2e-17 seq439 98.7 9e-16 seq175 98.7 9e-16 seq328 86.0 6e-12 >seq243 Length=56764 Score = 125 bits (138), Expect = 7e-24 Identities = 158/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | || || ||||| ||||| |||||||| | |||||| ||||||| Sbjct 37869 ACCAAATGAAGAGTAGATTCCTTTTGGATGTTATAGTCGCTTAGGGTACGACCATCTTCG 37928 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 || |||||||| | | |||| ||||| |||||||| ||||| || ||||| || || | Sbjct 37929 AGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGAGGAATACCTTCCTTGTCTTGA 37988 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||||||||| | | || | ||| || | | ||| ||||| | || | | | || Sbjct 37989 ATTTTTTGTTTTACATTGTCGATAGTGTCAGAAGACTCGACTTCTAAAGTAATCATCTTT 38048 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCATGACTTATT 132131 ||||| || || || | || || ||||||| |||| Sbjct 38049 CCAGTAAGTGTCTTGACAAAGATTTGCATGATATATT 38085 >seq769 Length=21522 Score = 116 bits (128), Expect = 4e-21 Identities = 147/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || ||||||||||| |||||||| | |||||| ||||||||| |||||||| | | Sbjct 14262 GATTCCTTTTGAATGTTATAGTCGCTTAGGGTACGACCATCTTCGAGTTGTTTACCAGCA 14203 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| ||||| |||||||| ||||| || ||||| || || ||| |||||||| | Sbjct 14202 AAGATGAGACGTTGTTGATCAGGAGGAATACCTTCCTTGTCTTGAATCTTTTGTTTTACA 14143 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||| || | | || ||||| | || | || || ||||| || || || Sbjct 14142 TTGTCGATAGTGTCAGAAGATTCAACTTCTAAAGTAATTGTCTTTCCAGTAAGTGTCTTG 14083 Query 132110 ATGAAAATCTGCATGACTTATT 132131 | || || ||||||| |||| Sbjct 14082 ACAAAGATTTGCATGATGTATT 14061 >seq815 Length=19846 Score = 113 bits (124), Expect = 4e-20 Identities = 408/626 (65%), Gaps = 17/626 (3%) Strand=Plus/Plus Query 147791 GCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTTTGCAATCCTCGG 147850 |||| || ||||| || | ||| || || || | |||||||| ||| || || || Sbjct 16996 GCATGAAGAGATCAGGAATCCAGAGAGCATAGAACAGATCGCGAGCTCTGATTTCGTCTT 17055 Query 147851 CGCCCATGTTGCGTTTCAAATTAAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGT 147910 ||| | ||| | ||||| | | | | | ||||| || ||||||||||| | || Sbjct 17056 TGCCAAAGTTTTTTCGCAAATCTAAAAAGGTGAAAATGTCTGCATGCCAGGGTTCCAAGT 17115 Query 147911 AGACGGCCA--GCGC----ACCTTTACGCTTTCCGCCCTGGTCGACATGGCGCACCATGT 147964 | | || | |||| || |||| || ||||| || ||||||| || || | | Sbjct 17116 ACATTGCGAATGCGCCCGGACGTTTA---TTACCGCCTTGATCGACATAACGAGCCGTAT 17172 Query 147965 TGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTG-CCGTTGGTGGAATTGATC 148023 |||| || || || | |||||| | ||| | | ||| ||||||||| || Sbjct 17173 TGTTGAAAACACGTAGCATGGGCAGTAATCCGTTGG-AGTAACCGTTGGTGCCGGCAATA 17231 Query 148024 T-TGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCC-GCCGTACTTTG 148081 | || | || | || || | | ||| | ||| | |||||||||||| || || ||| | Sbjct 17232 TATGAT-CCACTAGCACGAATGTTGTGAATGTTCAAGCCAATGCCGCCTGCTGT-CTTGG 17289 Query 148082 ATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGATGCTGTCGTTTTTGACGC 148141 | || ||| || | ||| ||||| || ||||| || | || | | Sbjct 17290 AGATTTGAGCACAGATTTTGAGCGTCTCATAGATACCTTCGATCGAATCTTCCTTCATGG 17349 Query 148142 CAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGAC 148201 ||||| || || ||| ||||||| ||| | || || || || | || |||| Sbjct 17350 TGAGCAAGAAGCAAGAAGACATTTGGGGACGAGGTGTGCCTGCATTAAATAAAGTAGGAC 17409 Query 148202 TCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATAGCGTCTTCGATGT 148261 | ||||| ||||| || ||| | ||||| | || ||||||||||| | || || | Sbjct 17410 TAGCGTGTGTAAAGTATCTTTCAGACATCAAGTTGTATGTCTCAATAGCTGCATCAATAT 17469 Query 148262 CGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTCGGCAA-CT 148320 || || || || || | || || ||||||| || || || || ||||| |||| || Sbjct 17470 CGGTTCCATGGATACCGATTGCAACACGCATGATCAAATGTTGAGGACGTTCAGCAATCT 17529 Query 148321 TGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCAAAGTACTTGTAA 148380 || || ||||||||||| || | |||||||||||| |||||||| | ||||| Sbjct 17530 TG-CCGTCAATCTTGAGAAGGTAAGAACGCTCGAGGGTTTTGAAACCAAAGAAGTTGTAC 17588 Query 148381 TCAAAATCTAGCTCGTAAGCGATGGC 148406 | ||||| | || || |||||| Sbjct 17589 TTGAAATCACGGTCATAGATGATGGC 17614 >seq71 Length=102704 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | || || ||||| ||||||||||| |||| ||||| ||| || Sbjct 21498 ACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCACTCAAAGTACGACCATCCTCA 21557 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 || |||||||| | | |||| || | |||||| || ||||| || ||||| || || | Sbjct 21558 AGTTGTTTACCAGCAAAGATAAGTCTCTGTTGGTCAGGAGGGATACCTTCCTTGTCTTGA 21617 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || ||||| || | | ||| | | |||| | | || ||||| | || | ||| || Sbjct 21618 ATCTTTTGCTTGACATTTTCGATACTATCAGAAGATTCGACTTCTAAAGTAATCGTCTTG 21677 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || ||||| |||| ||| || ||||| Sbjct 21678 CCGGTAAGAGTCTTTACGAAGATTTGCAT 21706 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 |||||| || | | | || || ||||| ||||||||||| |||| ||||| ||| || Sbjct 21269 AACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCACTCAAAGTACGGCCATCCTC 21328 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 ||||| || |||| | || ||||| ||||| || ||||| || ||||| ||||| Sbjct 21329 AAGCTGCTTGCCGGCGAAAATGAGACGTTGTTGGTCAGGAGGAATACCTTCCTTATCTTG 21388 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 || ||||| || | | ||| | | |||| | | ||| || || | || | || || Sbjct 21389 GATCTTTTGCTTGACATTTTCAATACTATCAGAGGACTCAACCTCCAAGGTAATGGTCTT 21448 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||| ||||| || | || || ||||| Sbjct 21449 ACCAGTGAGAGTCTTGACAAAGATTTGCAT 21478 >seq291 Length=50391 Score = 105 bits (116), Expect = 6e-18 Identities = 336/510 (66%), Gaps = 11/510 (2%) Strand=Plus/Minus Query 147886 ATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTT---CCGCCC 147942 ||||| || ||||||||||| | ||| | || | || || |||||| ||||| Sbjct 27538 ATGTCTGCATGCCAGGGTTCCAAGTACATTGCGAATGCGCCCGGACGCTTATTACCGCCT 27479 Query 147943 TGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCA 148002 || ||||||| || || | ||||| || || || | |||||| | ||| | | | Sbjct 27478 TGATCGACATAACGAGCCGTATTGTTGAAAACACGGAGCATGGGCAATAATCCGTTGG-A 27420 Query 148003 GTG-CCGTTGGTGGAATTGATCT-TGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGC 148060 || ||||||||| || | || | || | || || | | ||| | ||| | || Sbjct 27419 GTAACCGTTGGTGCCGGCAATGTATGAT-CCACTAGCACGAATGTTGTGAATGTTCAAGC 27361 Query 148061 CAATGCCGCC-GCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCG 148119 |||| ||||| || || ||| || || ||| || | ||| ||||| || Sbjct 27360 CAATACCGCCTGCTGT-CTTGGAGATTTGAGCACAGATTTTGAGCGTCTCATAGATACCT 27302 Query 148120 TCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTT 148179 ||||| || | || | | ||||| ||||| ||| ||||||| ||| | || Sbjct 27301 TCGATCGAATCTTCCTTCATGGTGAGCAAGAAACAAGAAGACATTTGGGGACGAGGTGTG 27242 Query 148180 CCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATAC 148239 || || || || || ||||| ||||| || || |||||| ||||| | || Sbjct 27241 CCTGCATTAAATAGAGTAGGACTAGCGTGTGTGAAGTATTTTTCGGACATCAAGTTGTAT 27182 Query 148240 GTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATG 148299 ||||||||||| | || || ||| || || || || | || || ||||||| || Sbjct 27181 GTCTCAATAGCTGCATCAATATCGGTTCCATGGATACCGATTGCAACACGCATGATCAAA 27122 Query 148300 TGCTGTGGTCGTTCGGCAA-CTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGT 148358 || || || ||||| |||| |||| || ||||||||||| || | |||||||| Sbjct 27121 TGTTGAGGACGTTCAGCAATCTTGCC-GTCAATCTTGAGAAGGTAAGAACGCTCGAGGGT 27063 Query 148359 TTTGTAACCAAAGTACTTGTAATCAAAATC 148388 |||| |||||||| | ||||| | ||||| Sbjct 27062 TTTGAAACCAAAGAAGTTGTACTTGAAATC 27033 >seq686 Length=24674 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 |||||| || | | || |||||||||||||| || || |||| ||||| ||||| Sbjct 10758 AACCAAGTGAAGAGTAGATTCTTTTTGAATGTTATAATCACTCAAAGTACGACCGTCTTC 10699 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 ||| |||||||| | | || ||||| ||||| || ||||| || ||||| ||||| Sbjct 10698 GAGTTGTTTACCAGCGAAAATGAGACGTTGTTGGTCAGGAGGGATACCTTCCTTATCTTG 10639 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||| ||||| || | | ||| | | |||| | | || ||||| | || | || || Sbjct 10638 AATCTTTTGCTTGACATTTTCGATACTATCAGAAGATTCAACTTCTAAAGTAATTGTCTT 10579 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || ||||| |||| ||| || ||||| Sbjct 10578 GCCGGTAAGAGTCTTTACGAAGATTTGCAT 10549 >seq439 Length=37054 Score = 98.7 bits (108), Expect = 9e-16 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 |||||| || | | | || || |||||||||||||| || |||| |||||| ||||| Sbjct 23583 AACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCACTCAAGGTACGACCGTCTTC 23524 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||| |||||||||| | || ||||| |||||||| ||||| || ||||| ||||| Sbjct 23523 GAGTTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGGATACCTTCCTTATC 23467 >seq175 Length=68572 Score = 98.7 bits (108), Expect = 9e-16 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 |||||| || | | | || || |||||||||||||| || |||| |||||| ||||| Sbjct 14533 AACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCACTCAAGGTACGACCGTCTTC 14474 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||| |||||||||| | || ||||| |||||||| ||||| || ||||| ||||| Sbjct 14473 GAGTTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGGATACCTTCCTTATC 14417 >seq328 Length=46411 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146863 AGTTTAATGAGGTCATCAATTAAATACTGATTGACCACTTGAAACTCGCCCGCCAGCACA 146922 |||| ||||||||||| | ||||| ||| ||||| | ||| || || || | ||| Sbjct 24931 AGTTCAATGAGGTCATTCAGTAAATGCTGGTTGACTATTTGGAATTCACCACTTTGAACA 24872 Query 146923 CGTCTGAGATACACATTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGG 146982 || | ||| | |||||||||| |||||||||| | || |||||||| |||||||| Sbjct 24871 CGACGTGTATAAATATTGCTAGTGTAAGGCTCAAAGCATTCGTTATTGCCCAATATTTGA 24812 Query 146983 GCCGTGGTTGCGGTAGGCAT 147002 ||| | || |||||||| Sbjct 24811 CTAGTGCTAGCAGTAGGCAT 24792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476601941827440