Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F000825725.1_202014-12-08] 1,554 sequences; 49,238,270 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq243 118 9e-22 seq769 116 3e-21 seq686 113 4e-20 seq228 96.9 3e-15 seq439 93.3 4e-14 seq175 93.3 4e-14 >seq243 Length=56764 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | ||||| || ||| | || ||||| ||| || | |||||||| | Sbjct 38078 CATGCAAATCTTTGTCAAGACACTTACTGGAAAGATGATTACTTTAGAAGTCGAGTCTTC 38019 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || |||||||| | ||||||||||||||| || || || ||||| || || ||||| Sbjct 38018 TGACACTATCGACAATGTAAAACAAAAAATTCAAGACAAGGAAGGTATTCCTCCTGATCA 37959 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| | ||||| | | || |||||||||||||||| | | | | ||||| || || Sbjct 37958 ACAACGTCTCATCTTTGCTGGTAAACAACTCGAAGATGGTCGTACCCTAAGCGACTATAA 37899 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGT 25383 || ||||| ||||| || ||||||| || Sbjct 37898 CATCCAAAAGGAATCTACTCTTCATTTGGT 37869 >seq769 Length=21522 Score = 116 bits (128), Expect = 3e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 25170 ACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAG 25229 ||| ||||||| | ||||| || ||| | || ||||| | || || | ||||| ||| Sbjct 14064 ACATCATGCAAATCTTTGTCAAGACACTTACTGGAAAGACAATTACTTTAGAAGTTGAAT 14123 Query 25230 CCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCG 25289 | || |||||||| | ||||||||||| ||| || || || ||||| || || | Sbjct 14124 CTTCTGACACTATCGACAATGTAAAACAAAAGATTCAAGACAAGGAAGGTATTCCTCCTG 14183 Query 25290 ATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATT 25349 |||| ||| | ||||| | | || |||||||||||||||| | | | | ||||| | Sbjct 14184 ATCAACAACGTCTCATCTTTGCTGGTAAACAACTCGAAGATGGTCGTACCCTAAGCGACT 14243 Query 25350 ACAATATTCAAAAAGAATCCACCATTCATTTAGT 25383 | || |||||||| ||||| || |||| || || Sbjct 14244 ATAACATTCAAAAGGAATCTACTCTTCACTTGGT 14277 >seq686 Length=24674 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 || |||||| | || ||||| || | ||||| || | || || | ||||| ||| | Sbjct 10546 AAAATGCAAATCTTCGTAAAGACTCTTACCGGCAAGACAATTACTTTAGAAGTTGAATCT 10605 Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291 |||| |||||| | || || ||||| ||| ||||| || ||||| || || || Sbjct 10606 TCTGATAGTATCGAAAATGTCAAGCAAAAGATTCAAGATAAGGAAGGTATCCCTCCTGAC 10665 Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTAC 25351 || ||| | ||||||| || || |||||||||||||| | | | | | | || ||||| Sbjct 10666 CAACAACGTCTCATTTTCGCTGGTAAACAACTCGAAGACGGTCGTACTTTGAGTGATTAT 10725 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGT 25383 || |||||||||||||| || |||| || || Sbjct 10726 AACATTCAAAAAGAATCTACTCTTCACTTGGT 10757 >seq228 Length=59556 Score = 96.9 bits (106), Expect = 3e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 136650 GATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTTTAAACCCTTCTC 136709 ||||| || | |||||| ||| ||||| |||||||||||| |||||||| ||||||| Sbjct 46537 GATTGCATCAACTGCAGGTCTAGATCTCAAATAGTACATGCCAGTCTTTAATCCCTTCTT 46478 Query 136710 CCAGGAATAATTATGTATAGATGACAAAATTTTATAGCTCGGATCGGCCACGAAAAGATT 136769 ||||| |||| || ||||| | || | | || | || ||||| || | ||| Sbjct 46477 CCAGGCATAAAAGTGCATAGAGGTCAGCTTGCCAAAGTTTGGTTCGGCAGTAAACAAATT 46418 Query 136770 TAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGTTCAATAGTACTT- 136828 | ||||| || ||||| ||| ||| | || ||||||||| |||||| || || Sbjct 46417 CATAGATTGAGATTGGTCGATAAAAGCTCCTCTATCAGCGGCCATG-TCAATAATAGTTC 46359 Query 136829 TTTGCTTAATTTCCCAAGCGGTTTTAAAGAGCTCCTTGACAT 136870 |||| ||| ||||| | ||||| | |||| |||| || Sbjct 46358 TTTGTGAAATCTCCCATACTGTTTTGTATAGCTTTTTGAGAT 46317 >seq439 Length=37054 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25250 GTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTAC 25309 || || ||||| || ||||| || ||||| || || ||||| ||| | ||||||| | Sbjct 23449 GTCAAGCAAAAGATCCAAGATAAGGAAGGTATCCCTCCTGATCAACAACGTCTCATTTTC 23508 Query 25310 GGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCC 25369 | ||| |||||||||||||| | | | | | || |||||||| |||||||| ||||| Sbjct 23509 GCCGGTAAACAACTCGAAGACGGTCGTACCTTGAGTGATTACAACATTCAAAAGGAATCT 23568 Query 25370 ACCATTCATTTAGT 25383 ||| |||| || || Sbjct 23569 ACCCTTCACTTGGT 23582 >seq175 Length=68572 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25250 GTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTAC 25309 || || ||||| || ||||| || ||||| || || ||||| ||| | ||||||| | Sbjct 14399 GTCAAGCAAAAGATCCAAGATAAGGAAGGTATCCCTCCTGATCAACAACGTCTCATTTTC 14458 Query 25310 GGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCC 25369 | ||| |||||||||||||| | | | | | || |||||||| |||||||| ||||| Sbjct 14459 GCCGGTAAACAACTCGAAGACGGTCGTACCTTGAGTGATTACAACATTCAAAAGGAATCT 14518 Query 25370 ACCATTCATTTAGT 25383 ||| |||| || || Sbjct 14519 ACCCTTCACTTGGT 14532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445085754041280