Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F000825725.1_202014-12-08] 1,554 sequences; 49,238,270 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq291 136 4e-27 seq815 129 6e-25 seq656 86.0 7e-12 seq862 82.4 8e-11 >seq291 Length=50391 Score = 136 bits (150), Expect = 4e-27 Identities = 252/365 (69%), Gaps = 6/365 (2%) Strand=Plus/Minus Query 79477 ATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCC 79536 ||||| || ||||| || |||| || || ||||| | ||| ||||| ||||| Sbjct 27538 ATGTCTGCATGCCAGGGTTCCAAGTACATTGCGAATGCGCCCGGACGCTTATTACCGCCT 27479 Query 79537 TGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCG 79596 || | ||| || || ||||| ||||||||||| ||||||||||||| | |||| || | Sbjct 27478 TGATCGACATAACGAGCCGTATTGTTGAAAACACGGAGCATGGGCAATAATCCGTTGGAG 27419 Query 79597 ACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCA-GTGGATTCC 79655 ||||| || ||| || || || || || |||||||| | | | || | || Sbjct 27418 TAACCGTTGGTGCCGGCAATGTATGATCCACTAGCACGAATGTT-GTGAATGTTCAAGCC 27360 Query 79656 GATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTC 79715 || || || | ||||||||| || || || ||||||||||| ||||| || || Sbjct 27359 AATACCGCCTGCTGTCTTGGAGATTTGAGCACAGATTTTGAGCGTCTCATAGATACCTTC 27300 Query 79716 GATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGG--GTTGTTCGTA 79773 |||||| || |||||||| | || || ||| || ||||| || || | || || Sbjct 27299 GATCGAATCTTCCTTCATGGTGAGCAAGAAACAAGAAGACATTTGGGGACGAGGT--GTG 27242 Query 79774 CCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTAC 79833 || || || || || || || | ||||| |||||| | |||| | ||||| | ||| Sbjct 27241 CCTGCATTAAATAGAGTAGGACTAGCGTGTGTGAAGTATTTTTCGGACATCAAGTTGTAT 27182 Query 79834 GTCTC 79838 ||||| Sbjct 27181 GTCTC 27177 >seq815 Length=19846 Score = 129 bits (142), Expect = 6e-25 Identities = 252/370 (68%), Gaps = 2/370 (1%) Strand=Plus/Plus Query 79380 CTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTC 79439 || ||||||||| || || ||||| || || ||| || ||||| | || || || Sbjct 16994 CTGCATGAAGAGATCAGGAATCCAGAGAGCATAGAACAGATCGCGAGCTCTGATTTCGTC 17053 Query 79440 GTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAG 79499 | ||| ||| |||| || | |||| | ||||| || ||||| || |||| Sbjct 17054 TTTGCCAAAGTTTTTTCGCAAATCTAAAAAGGTGAAAATGTCTGCATGCCAGGGTTCCAA 17113 Query 79500 ATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTT 79559 || || ||||| | ||| || || ||||| || | ||| || || ||||| || Sbjct 17114 GTACATTGCGAATGCGCCCGGACGTTTATTACCGCCTTGATCGACATAACGAGCCGTATT 17173 Query 79560 GTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCG 79619 ||||||||| || |||||||||| | |||| || | ||||| || ||| || Sbjct 17174 GTTGAAAACACGTAGCATGGGCAGTAATCCGTTGGAGTAACCGTTGGTGCCGGCAATATA 17233 Query 79620 TGTACCGCTCGCCCGAATGTTCGAGCA-GTGGATTCCGATGCCCCCGGACCACTTGGAGA 79678 || || || || |||||||| | | | || | || ||||| || | |||||||| Sbjct 17234 TGATCCACTAGCACGAATGTT-GTGAATGTTCAAGCCAATGCCGCCTGCTGTCTTGGAGA 17292 Query 79679 TGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGA 79738 | || || || ||||||||||| ||||| || |||||||| || |||||||| | || Sbjct 17293 TTTGAGCACAGATTTTGAGCGTCTCATAGATACCTTCGATCGAATCTTCCTTCATGGTGA 17352 Query 79739 CCAGGAAGCA 79748 || |||||| Sbjct 17353 GCAAGAAGCA 17362 >seq656 Length=25916 Score = 86.0 bits (94), Expect = 7e-12 Identities = 144/204 (71%), Gaps = 6/204 (3%) Strand=Plus/Minus Query 59930 AAAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGAGCA--TCATTTGCACAACGTCTC 59987 ||| || || |||||| | ||||||| |||| | | || ||||| | ||||| Sbjct 977 AAAGGCTGATTGGGCCTTCAAGTGGATT--TCCTCTAACGGTTCTTTTGCTGAGCGTCTT 920 Query 59988 ATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTG 60046 | || ||||| ||| || ||||| |||||||||||||| || || | ||||||| || Sbjct 919 GTTGCCTTTGC-TGCTGTCGAAGGTATCTTCTTCTCTGGTTCCTTTGCTTCTATTTTTTG 861 Query 60047 GCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGA 60106 |||||| || ||||| | ||||| || ||| ||| ||| || |||| | || || Sbjct 860 GCTCAAGAAACGTGGTTTGATGCCTGGTTTGACATTCAGCAATGAATTGATCTGTCGTGA 801 Query 60107 CGAGGGCCTCCATCAGGAGTTTGC 60130 || ||||| ||| || ||||| Sbjct 800 TGAAGGCCTTCATACTGACTTTGC 777 >seq862 Length=17893 Score = 82.4 bits (90), Expect = 8e-11 Identities = 117/162 (72%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 59970 TCATTTGCACAACGTCTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTC 60028 || ||||| ||||||| | || ||||| ||| || ||||| |||||||||||||| || Sbjct 17326 TCTTTTGCTGAACGTCTTGTTGCCTTTGC-TGCTGTCGAAGGTATCTTCTTCTCTGGTTC 17384 Query 60029 GTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAA 60088 || | | || || ||||||||||| ||||| || ||||| || ||| ||| ||| Sbjct 17385 CTTTGCTTCCATCTTTTGGCTCAAAAAACGTGGTCTGATGCCCGGTTTGACATTCAGCAA 17444 Query 60089 CGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGC 60130 || |||| | || || || || || ||| || ||||| Sbjct 17445 TGAATTGATCTGTCGTGATGAAGGTCTTCATACTGACTTTGC 17486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548514144905760