Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F000825725.1_202014-12-08] 1,554 sequences; 49,238,270 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq769 98.7 6e-16 seq80 98.7 6e-16 seq686 96.9 2e-15 seq243 95.1 8e-15 seq439 89.7 3e-13 seq175 89.7 3e-13 >seq769 Length=21522 Score = 98.7 bits (108), Expect = 6e-16 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || ||||| ||||||||||||||||| || || || || Sbjct 14286 AGACGAAGGACCAAGTGAAGAGTAGATTCCTTTTGAATGTTATAGTCGCTTAGGGTACGA 14227 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| ||||||||||| ||||| || | ||| ||||| || || || | || ||| Sbjct 14226 CCATCTTCGAGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGAGGAATACCTTCC 14167 Query 34609 TTGTCTGTGATCTTTTGTTTTA 34630 |||||| ||||||||||||| Sbjct 14166 TTGTCTTGAATCTTTTGTTTTA 14145 >seq80 Length=97372 Score = 98.7 bits (108), Expect = 6e-16 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | || || |||||||| |||||||| |||||||| || Sbjct 13648 CCACCACGAAGACGGAGAACTAAGTGGAGAGTAGATTCCTTTTGGATGTTATAGTCGCTC 13707 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || ||||||| ||||||||||||||||| || | ||| |||||||| || || Sbjct 13708 AAGGTACGACCGTCTTCGAGTTGTTTACCGGCAAAGATAAGACGTTGTTGGTCAGGAGGA 13767 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTT 34628 | || ||||||||| |||||||| || Sbjct 13768 ATACCTTCCTTGTCTTGAATCTTTTGCTT 13796 >seq686 Length=24674 Score = 96.9 bits (106), Expect = 2e-15 Identities = 113/151 (75%), Gaps = 4/151 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC--TG 34537 ||||| | |||||| | ||||| || ||||| || ||||||||||||||||| | Sbjct 10775 CCGCCACGAAGACGAAGAACCAAGTGAAGAGTAGATTCTTTTTGAATGTTATAATCACTC 10716 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 ||||| || ||||||| ||||||||||| || || || | ||| |||||||| || | Sbjct 10715 AAAGTA--CGACCGTCTTCGAGTTGTTTACCAGCGAAAATGAGACGTTGTTGGTCAGGAG 10658 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTT 34628 | | || ||||| ||| |||||||| || Sbjct 10657 GGATACCTTCCTTATCTTGAATCTTTTGCTT 10627 >seq243 Length=56764 Score = 95.1 bits (104), Expect = 8e-15 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||| ||||| |||||||| |||||||| || || || || Sbjct 37860 AGACGAAGGACCAAATGAAGAGTAGATTCCTTTTGGATGTTATAGTCGCTTAGGGTACGA 37919 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| ||||||||||| ||||| || | ||| ||||| || || || | || ||| Sbjct 37920 CCATCTTCGAGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGAGGAATACCTTCC 37979 Query 34609 TTGTCTGTGATCTTTTGTTTTA 34630 |||||| || |||||||||| Sbjct 37980 TTGTCTTGAATTTTTTGTTTTA 38001 >seq439 Length=37054 Score = 89.7 bits (98), Expect = 3e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||| || || || |||||||||||||| ||||| Sbjct 23600 CCACCACGAAGACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCACTC 23541 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || ||||||| |||||||||||||| || || | ||| ||||| || || || Sbjct 23540 AAGGTACGACCGTCTTCGAGTTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGG 23481 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTT 34628 | || ||||| ||| ||||||||| || Sbjct 23480 ATACCTTCCTTATCTTGGATCTTTTGCTT 23452 >seq175 Length=68572 Score = 89.7 bits (98), Expect = 3e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||| || || || |||||||||||||| ||||| Sbjct 14550 CCACCACGAAGACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCACTC 14491 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || ||||||| |||||||||||||| || || | ||| ||||| || || || Sbjct 14490 AAGGTACGACCGTCTTCGAGTTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGG 14431 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTT 34628 | || ||||| ||| ||||||||| || Sbjct 14430 ATACCTTCCTTATCTTGGATCTTTTGCTT 14402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314723639218082