Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F000825725.1_202014-12-08] 1,554 sequences; 49,238,270 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq769 138 1e-27 seq243 129 5e-25 seq686 125 6e-24 seq439 118 9e-22 seq175 118 9e-22 seq71 118 9e-22 seq80 105 6e-18 >seq769 Length=21522 Score = 138 bits (152), Expect = 1e-27 Identities = 178/246 (72%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 26972 TTTTAATTTATACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCT 27031 |||| || |||| |||||| || ||||| || || || || || ||| | |||||| | Sbjct 14053 TTTTTATAAATACATCATGCAAATCTTTGTCAAGACACTTACTGGAAAGACAATTACTTT 14112 Query 27032 TGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGG 27091 ||||| ||| | || ||| | || || | || |||||||| ||||||||||| ||||| Sbjct 14113 AGAAGTTGAATCTTCTGACACTATCGACAATGTAAAACAAAAGATTCAAGACAAGGAAGG 14172 Query 27092 CATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGAC 27151 || || || |||||||| ||| | || | || || |||||| | ||||| || || Sbjct 14173 TATTCCTCCTGATCAACAACGTCTCATCTTTGCTGGTAAACAACTCGAAGATGGTCGTAC 14232 Query 27152 CGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGG 27211 | | ||| || |||||||||||||| || || | || ||||| | ||| | || || Sbjct 14233 CCTAAGCGACTATAACATTCAAAAGGAATCTACTCTTCACTTGGTCCTTCGTCTCCGTGG 14292 Query 27212 TGGCAT 27217 ||| || Sbjct 14293 TGGTAT 14298 >seq243 Length=56764 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || ||||| || || || || || ||| |||||| | ||||| || | || Sbjct 38078 CATGCAAATCTTTGTCAAGACACTTACTGGAAAGATGATTACTTTAGAAGTCGAGTCTTC 38019 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | || |||||||||||||||||||| ||||| || || || ||||| Sbjct 38018 TGACACTATCGACAATGTAAAACAAAAAATTCAAGACAAGGAAGGTATTCCTCCTGATCA 37959 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| ||| | || | || || |||||| | ||||| || ||| | ||| || || Sbjct 37958 ACAACGTCTCATCTTTGCTGGTAAACAACTCGAAGATGGTCGTACCCTAAGCGACTATAA 37899 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| |||||||| || || | |||||||| | ||| | || ||||| || Sbjct 37898 CATCCAAAAGGAATCTACTCTTCATTTGGTCCTTCGTCTCCGTGGTGGTAT 37848 >seq686 Length=24674 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || ||||| ||||| ||||||||| | |||||| | ||||| ||| | || Sbjct 10549 ATGCAAATCTTCGTAAAGACTCTTACCGGCAAGACAATTACTTTAGAAGTTGAATCTTCT 10608 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || || || | ||||| ||||| |||||||| || ||||| || || || || ||| Sbjct 10609 GATAGTATCGAAAATGTCAAGCAAAAGATTCAAGATAAGGAAGGTATCCCTCCTGACCAA 10668 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||| || |||||| | |||||| || || | ||||| ||| Sbjct 10669 CAACGTCTCATTTTCGCTGGTAAACAACTCGAAGACGGTCGTACTTTGAGTGATTATAAC 10728 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||| || || || | || |||||| | ||| | || || || Sbjct 10729 ATTCAAAAAGAATCTACTCTTCACTTGGTTCTTCGTCTTCGTGGCGG 10775 >seq439 Length=37054 Score = 118 bits (130), Expect = 9e-22 Identities = 130/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 || ||| | ||||| | ||||| ||||| || ||||| || ||||| || || || ||| Sbjct 23431 TCTGACACCATTGACAATGTCAAGCAAAAGATCCAAGATAAGGAAGGTATCCCTCCTGAT 23490 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 ||||| ||| | || | |||||| |||||| | |||||| || ||| | |||||| Sbjct 23491 CAACAACGTCTCATTTTCGCCGGTAAACAACTCGAAGACGGTCGTACCTTGAGTGATTAC 23550 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||||| || ||| | || |||||| | ||| | || ||||| || Sbjct 23551 AACATTCAAAAGGAATCTACCCTTCACTTGGTTCTCCGTCTTCGTGGTGGTAT 23603 >seq175 Length=68572 Score = 118 bits (130), Expect = 9e-22 Identities = 130/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 || ||| | ||||| | ||||| ||||| || ||||| || ||||| || || || ||| Sbjct 14381 TCTGACACCATTGACAATGTCAAGCAAAAGATCCAAGATAAGGAAGGTATCCCTCCTGAT 14440 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 ||||| ||| | || | |||||| |||||| | |||||| || ||| | |||||| Sbjct 14441 CAACAACGTCTCATTTTCGCCGGTAAACAACTCGAAGACGGTCGTACCTTGAGTGATTAC 14500 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||||| || ||| | || |||||| | ||| | || ||||| || Sbjct 14501 AACATTCAAAAGGAATCTACCCTTCACTTGGTTCTCCGTCTTCGTGGTGGTAT 14553 >seq71 Length=102704 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || ||||| ||||| ||||||||| | |||||| | ||||| ||| | || Sbjct 21706 ATGCAAATCTTCGTAAAGACTCTTACCGGCAAGACGATTACTTTAGAAGTCGAATCTTCT 21647 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || || || | ||||| ||||| ||||||||||| ||||| || || || || ||| Sbjct 21646 GATAGTATCGAAAATGTCAAGCAAAAGATTCAAGACAAGGAAGGTATCCCTCCTGACCAA 21587 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || |||||| | || || || || | || |||||| Sbjct 21586 CAGAGACTTATCTTTGCTGGTAAACAACTTGAGGATGGTCGTACTTTGAGTGACTACAAC 21527 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||| || ||| | || ||||| | ||| | || ||||| || Sbjct 21526 ATCCAAAAGGAATCTACCCTTCACTTGGTCCTTCGTCTTCGTGGTGGTAT 21477 >seq80 Length=97372 Score = 105 bits (116), Expect = 6e-18 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 |||||| | ||||| | ||||| ||||| ||||||||||| ||||| || || || || Sbjct 13817 TCCGACACCATTGACAACGTCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGAC 13758 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 ||||| ||| | || | ||||| |||||| | |||||| || ||| | ||| || Sbjct 13757 CAACAACGTCTTATCTTTGCCGGTAAACAACTCGAAGACGGTCGTACCTTGAGCGACTAT 13698 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| || || | || || ||| | ||| | || ||||| || Sbjct 13697 AACATCCAAAAGGAATCTACTCTCCACTTAGTTCTCCGTCTTCGTGGTGGTAT 13645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434909951710080