Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F000825725.1_202014-12-08] 1,554 sequences; 49,238,270 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq862 226 2e-54 seq656 194 1e-44 >seq862 Length=17893 Score = 226 bits (250), Expect = 2e-54 Identities = 558/838 (67%), Gaps = 14/838 (2%) Strand=Plus/Minus Query 4259 TTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTC 4318 ||| || || || || |||||||| ||||| || || ||||||| | || || | || Sbjct 17778 TTGATAATCAGAGACACGCTTTTCAAAGAAGTTGGTCTTGCCTTGAAGAGAGATCATGTC 17719 Query 4319 CATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAA 4378 |||||| ||||| ||||| || || ||||| || || | ||||| || | | Sbjct 17718 CATAAAGTCAAATGGATTGGTAGCCATGTAAATCTTGTCGAATCCAAGAGCAACCATGAG 17659 Query 4379 TCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCT 4438 || ||||| || ||||| || ||||| | ||| | | |||| || || || | Sbjct 17658 ACGATCAGCAACGAATTCGATGTACTGACACATCAAGGCAGAGTTCATGCCGATGAGAGC 17599 Query 4439 CACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATC 4498 || || || || | |||||||| |||||||| || | || ||||| ||| ||||| Sbjct 17598 GACGGGAAGAGCATCCGTCAAAAATTCTTGTTCAATGCTGACAGCTTCCAAGATGATATC 17539 Query 4499 TTTTATTTTATCTTTAGATGGTTTATTTACTAAG-TATCCAAACAATAAACACGCAAAAT 4557 || | |||| | | | |||| ||| | ||| || | ||| ||||| | Sbjct 17538 CTTGACGCGTTCTTG-GCTAGGACGCTTACGAAGATGGGTAAATAAAAGACAAGCAAAGT 17480 Query 4558 CACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTA 4617 || ||| | |||||| || | | |||| ||| || || || || |||||||| | Sbjct 17479 CAGTATGAAGACCTTCATCACGACAGATCAATTCATTGCTGAATGTCAAACCGGGCATCA 17420 Query 4618 AACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTA 4677 ||| | ||||| |||||||| || | ||||| || ||||| ||||| || ||||| | Sbjct 17419 GACCACGTTTTTTGAGCCAAAAGATGGAAGCAAAGGAACCAGAGAAGAAGATACCTTCGA 17360 Query 4678 CGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTA 4737 | || ||||| || || | || | || || | | || ||||||||| | Sbjct 17359 CAGCAGCAAAGGCAACAAGACGTTCAGCAAAAGAACCG---TTAGAGGAAATCCATTTGA 17303 Query 4738 ATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTAC 4797 | ||||| | ||| ||| |||| | || || || |||| ||||| ||| | | Sbjct 17302 AGGCCCAATCAGCCTTTCTCTTGATACAAGGGATAGTGTCAATAGCAGAAAAGAGCAT-- 17245 Query 4798 TTTTTTCAAATGG--GTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATG 4855 || |||| ||| ||||| ||||||||||| || | || || || |||| | || Sbjct 17244 TTCTTTCTCTTGGTTGTCTTTGATATAAGTGTCAATCAAAAGACTGTAAGTTTCTGCGTG 17185 Query 4856 TATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTA-CTTGAACTT 4914 |||||||| || || ||||| || || || ||| ||||||| | | |||| |||| Sbjct 17184 AATATTTTCAATCATGATTTGAAAGCCATAGAAACATTTAGCTTCAGGAATCTTG-ACTT 17126 Query 4915 CGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACG 4974 | | |||||| ||| || |||||||| || || || || || | ||||| || | Sbjct 17125 CATCACAAAAGTTTTGAACCAAGTTTTCATTAACAATGCCATCTGAACCAGCAAAGAAGG 17066 Query 4975 CCAAAACATGAGATATAAAGTACTGTTCG---TCAGGCTTAAGTTTTTTCCAGTGGGGCA 5031 ||||||| |||| |||||| | ||||| || | | | |||| ||| | | | Sbjct 17065 CCAAAACGCGAGAGATAAAGAAACGTTCGTTTTCGGTCATCTTGTTTTCCCAATCATGAA 17006 Query 5032 AATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTA 5089 || || | ||||| | ||||||| | |||||||| || ||||| ||||| || || Sbjct 17005 GGTCCTTGCTCAAATCGATTTCTTCAGCTGTCCAAAAGGAAGCTTCAGCTTTCTTATA 16948 >seq656 Length=25916 Score = 194 bits (214), Expect = 1e-44 Identities = 551/838 (66%), Gaps = 14/838 (2%) Strand=Plus/Plus Query 4259 TTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTC 4318 ||| || || || || |||||||| ||||| || || ||||||| | || || | || Sbjct 485 TTGATAGTCAGAGACACGCTTTTCAAAGAAGTTGGTCTTGCCTTGAAGAGAGATCATGTC 544 Query 4319 CATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAA 4378 |||||| ||||| ||||| || || ||||| || || | ||||| || | | Sbjct 545 CATAAAGTCAAATGGATTGGTAGCCATGTAAATCTTGTCGAATCCAAGAGCAACCATAAG 604 Query 4379 TCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCT 4438 || || || || ||||| || || |||| ||| | | | || || || || | Sbjct 605 GCGATCGGCAACGAATTCGATGTATTGGCACATCAAGGCAGAATTCATGCCGATGAGAGC 664 Query 4439 CACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATC 4498 || || || || | |||||||| || ||||| || | || ||||| ||| ||||| Sbjct 665 AACGGGAAGAGCATCCGTCAAAAATTCCTGTTCAATGCTGACAGCTTCCAAGATGATATC 724 Query 4499 TTTTATTTTATCTTTAGATGGTTTATTTACTAAG-TATCCAAACAATAAACACGCAAAAT 4557 || | |||| | | | |||| ||| | ||| || | ||| ||||| | Sbjct 725 CTTGACGCGTTCTTG-GCTAGGACGCTTACGAAGATGGGTAAATAAAAGACAAGCAAAGT 783 Query 4558 CACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTA 4617 || ||| | ||||| || | | |||| ||| || || || || || ||||| | Sbjct 784 CAGTATGAAGGCCTTCATCACGACAGATCAATTCATTGCTGAATGTCAAACCAGGCATCA 843 Query 4618 AACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTA 4677 |||| | || || |||||||| |||| ||||| || ||||| ||||| || ||||| | Sbjct 844 AACCACGTTTCTTGAGCCAAAAAATAGAAGCAAAGGAACCAGAGAAGAAGATACCTTCGA 903 Query 4678 CGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTA 4737 | || ||||| || || | || | || || | | || |||||| || | Sbjct 904 CAGCAGCAAAGGCAACAAGACGCTCAGCAAAAGAACCG---TTAGAGGAAATCCACTTGA 960 Query 4738 ATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA--ATTT 4795 | ||||| | ||| ||| | || | || || || |||| ||||| ||||| |||| Sbjct 961 AGGCCCAATCAGCCTTTCTTTTGATACAGGGGATAGTGTCAATAGCAGAAAATAGCATTT 1020 Query 4796 ACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATG 4855 || | | | | |||| ||||||||||| || | || || || |||| | || Sbjct 1021 CTTTCTCTTGATTA--TCTTTGATATAAGTGTCAATCAAAAGACTGTAAGTTTCTGCGTG 1078 Query 4856 TATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTA-CTTGAACTT 4914 || ||||| || || ||||| || || || ||| ||||||| | | |||| |||| Sbjct 1079 AATGTTTTCAATCATGATTTGAAAGCCATAGAAACATTTAGCTTCAGGAATCTTG-ACTT 1137 Query 4915 CGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACG 4974 | | |||||| ||| || |||||||| || || || || || | ||||| || | Sbjct 1138 CATCACAAAAGTTTTGAACCAAGTTTTCATTAACAATGCCATCTGAACCAGCAAAGAAGG 1197 Query 4975 CCAAAACATGAGATATAAAGTACTGTTCG---TCAGGCTTAAGTTTTTTCCAGTGGGGCA 5031 |||| || |||| |||||| | ||||| |||| | | |||| ||| | | | Sbjct 1198 CCAAGACGCGAGAGATAAAGAAGCGTTCGTTTTCAGTCATCTTGTTTTCCCAATCATGAA 1257 Query 5032 AATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTA 5089 || || | ||||| | ||||||| | |||||||| || ||||| ||||| || || Sbjct 1258 GGTCCTTGCTCAAATCGATTTCTTCAGCTGTCCAAAAGGAAGCTTCAGCTTTCTTATA 1315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427041511947482