Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F000825725.1_202014-12-08] 1,554 sequences; 49,238,270 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq71 154 3e-32 seq686 143 6e-29 seq243 125 2e-23 seq769 113 1e-19 seq80 93.3 1e-13 seq439 86.0 1e-11 seq175 86.0 1e-11 >seq71 Length=102704 Score = 154 bits (170), Expect = 3e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | ||||| ||||| || |||||||||||||| || ||||| | ||||| Sbjct 21495 AGGACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCACTCAAAGTACGACCATCC 21554 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || || |||||||| ||||| ||||| | | ||| |||||||| ||| Sbjct 21555 TCAAGTTGTTTACCAGCAAAGATAAGTCTCTGTTGGTCAGGAGGGATACCTTCCTTGTCT 21614 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| ||||| |||||| | || | || || ||| || ||||| | |||||| || Sbjct 21615 TGAATCTTTTGCTTGACATTTTCGATACTATCAGAAGATTCGACTTCTAAAGTAATCGTC 21674 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || |||||||| ||||||| |||||||| Sbjct 21675 TTGCCGGTAAGAGTCTTTACGAAGATTTGCATTTT 21709 Score = 111 bits (122), Expect = 4e-19 Identities = 150/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| ||||| || |||||||||||||| || ||||| | ||||| || | Sbjct 21272 CAAG-TGAAGGGTAGATTCCTTTTGGATGTTGTAGTCACTCAAAGTACGGCCATCCTCAA 21330 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || |||||||| || || | || ||||| | | || |||||||| ||||| | Sbjct 21331 GCTGCTTGCCGGCGAAAATGAGACGTTGTTGGTCAGGAGGAATACCTTCCTTATCTTGGA 21390 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||||| |||||| | || | || || || ||| || || | ||||| || || | Sbjct 21391 TCTTTTGCTTGACATTTTCAATACTATCAGAGGACTCAACCTCCAAGGTAATGGTCTTAC 21450 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||||||||| || |||| ||||| Sbjct 21451 CAGTGAGAGTCTTGACAAAGATTTGCAT 21478 >seq686 Length=24674 Score = 143 bits (158), Expect = 6e-29 Identities = 159/211 (75%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||||||||| |||||||| ||||| ||||| ||||| | || ||||| | Sbjct 10755 CAAG-TGAAGAGTAGATTCTTTTTGAATGTTATAATCACTCAAAGTACGACCGTCTTCGA 10697 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| || ||||| || || | || ||||| | | ||| |||||||| ||||||| Sbjct 10696 GTTGTTTACCAGCGAAAATGAGACGTTGTTGGTCAGGAGGGATACCTTCCTTATCTTGAA 10637 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||||| |||||| | || | || || ||| || ||||| | |||||| || |||| Sbjct 10636 TCTTTTGCTTGACATTTTCGATACTATCAGAAGATTCAACTTCTAAAGTAATTGTCTTGC 10577 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | || |||||||| ||||||| |||||||| Sbjct 10576 CGGTAAGAGTCTTTACGAAGATTTGCATTTT 10546 >seq243 Length=56764 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | |||||||||||| || ||||||||||| || ||| || || | |||||| Sbjct 37866 AGGACCAAATGAAGAGTAGATTCCTTTTGGATGTTATAGTCGCTTAGGGTACGACCATCT 37925 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || || ||||| || | || || || | | || |||||||| ||| Sbjct 37926 TCGAGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGAGGAATACCTTCCTTGTCT 37985 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 |||||||||||||| ||| | || | |||| ||| ||| ||||| | |||||| | Sbjct 37986 TGAATTTTTTGTTTTACATTGTCGATAGTGTCAGAAGACTCGACTTCTAAAGTAATCATC 38045 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| || |||| ||||| Sbjct 38046 TTTCCAGTAAGTGTCTTGACAAAGATTTGCAT 38077 >seq769 Length=21522 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | ||||||||||| || ||||| ||||| || ||| || || | |||||| Sbjct 14280 AGGACCAAGTGAAGAGTAGATTCCTTTTGAATGTTATAGTCGCTTAGGGTACGACCATCT 14221 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || || ||||| || | || || || | | || |||||||| ||| Sbjct 14220 TCGAGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGAGGAATACCTTCCTTGTCT 14161 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| |||||||| ||| | || | |||| ||| || ||||| | |||||| || Sbjct 14160 TGAATCTTTTGTTTTACATTGTCGATAGTGTCAGAAGATTCAACTTCTAAAGTAATTGTC 14101 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| || |||| ||||| Sbjct 14100 TTTCCAGTAAGTGTCTTGACAAAGATTTGCAT 14069 >seq80 Length=97372 Score = 93.3 bits (102), Expect = 1e-13 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 || |||||||| || ||||||||||| || ||| || || | || ||||| || | Sbjct 13672 TGGAGAGTAGATTCCTTTTGGATGTTATAGTCGCTCAAGGTACGACCGTCTTCGAGTTGT 13731 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || ||||| |||||||| | || ||||| | | || |||||||| |||||||| ||| Sbjct 13732 TTACCGGCAAAGATAAGACGTTGTTGGTCAGGAGGAATACCTTCCTTGTCTTGAATCTTT 13791 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACT 152050 || ||||| | || | | |||| ||||| Sbjct 13792 TGCTTGACGTTGTCAATGGTGTCGGAACT 13820 >seq439 Length=37054 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/154 (73%), Gaps = 1/154 (1%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| ||||| || ||||| ||||||||||| || || | || ||||| | Sbjct 23580 CAAG-TGAAGGGTAGATTCCTTTTGAATGTTGTAATCACTCAAGGTACGACCGTCTTCGA 23522 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| |||||||| || || | || || || | | ||| |||||||| ||||| | Sbjct 23521 GTTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGGATACCTTCCTTATCTTGGA 23462 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT 152050 | ||||| |||||| | || | | |||| || || Sbjct 23461 TCTTTTGCTTGACATTGTCAATGGTGTCAGAGCT 23428 >seq175 Length=68572 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/154 (73%), Gaps = 1/154 (1%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| ||||| || ||||| ||||||||||| || || | || ||||| | Sbjct 14530 CAAG-TGAAGGGTAGATTCCTTTTGAATGTTGTAATCACTCAAGGTACGACCGTCTTCGA 14472 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| |||||||| || || | || || || | | ||| |||||||| ||||| | Sbjct 14471 GTTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGGATACCTTCCTTATCTTGGA 14412 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT 152050 | ||||| |||||| | || | | |||| || || Sbjct 14411 TCTTTTGCTTGACATTGTCAATGGTGTCAGAGCT 14378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153797826706734