Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F000825725.1_202014-12-08] 1,554 sequences; 49,238,270 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq769 96.9 3e-15 seq243 96.9 3e-15 seq686 86.0 5e-12 >seq769 Length=21522 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| |||||||| || | || || || || ||||| | ||| ||| | Sbjct 14069 ATGCAAATCTTTGTCAAGACACTTACTGGAAAGACAATTACTTTAGAAGTTGAATCTTCT 14128 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || || | | | | ||||||||||| ||| ||||| ||||| |||| |||||| Sbjct 14129 GACACTATCGACAATGTAAAACAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAA 14188 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 111277 ||| | || || | ||| || |||||| | |||||| || | ||| | ||| |||| Sbjct 14189 CAACGTCTCATCTTTGCTGGTAAACAACTCGAAGATGGTCGTACCCTAAG--CGACTATA 14246 Query 111278 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 | || ||||| |||||||| || || || || | ||||| || ||||| Sbjct 14247 ACATTCAAAAGGAATCTACTCTTCACTTGGTCCTTCGTCTCCGTGGTGG 14295 >seq243 Length=56764 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| |||||||| || | || || || | ||||| | ||| || | Sbjct 38077 ATGCAAATCTTTGTCAAGACACTTACTGGAAAGATGATTACTTTAGAAGTCGAGTCTTCT 38018 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || || | | | | ||||||||||||||| ||||| ||||| |||| |||||| Sbjct 38017 GACACTATCGACAATGTAAAACAAAAAATTCAAGACAAGGAAGGTATTCCTCCTGATCAA 37958 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 111277 ||| | || || | ||| || |||||| | |||||| || | ||| | ||| |||| Sbjct 37957 CAACGTCTCATCTTTGCTGGTAAACAACTCGAAGATGGTCGTACCCTAAG--CGACTATA 37900 Query 111278 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 | || ||||| |||||||| || ||||| || | ||||| || ||||| Sbjct 37899 ACATCCAAAAGGAATCTACTCTTCATTTGGTCCTTCGTCTCCGTGGTGG 37851 >seq686 Length=24674 Score = 86.0 bits (94), Expect = 5e-12 Identities = 165/242 (68%), Gaps = 1/242 (0%) Strand=Plus/Plus Query 111093 TTTAAAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGA 111152 || |||||||||||| || || || || | |||||||| || ||||| | ||| || Sbjct 10542 TTAAAAAATGCAAATCTTCGTAAAGACTCTTACCGGCAAGACAATTACTTTAGAAGTTGA 10601 Query 111153 ACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGT 111212 | | ||| | | | | || || ||||| ||| || || ||||| | || Sbjct 10602 ATCTTCTGATAGTATCGAAAATGTCAAGCAAAAGATTCAAGATAAGGAAGGTATCCCTCC 10661 Query 111213 CGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGA 111272 || |||||| | || |||| || || |||||| | ||||| | ||| || || Sbjct 10662 TGACCAACAACGTCTCATTTTCGCTGGTAAACAACTCGAAGACGGTCGTACTTTGAGTGA 10721 Query 111273 TTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG-CAATA 111331 |||||| || |||||||||||||| || || || || | ||||| || || || ||||| Sbjct 10722 TTATAACATTCAAAAAGAATCTACTCTTCACTTGGTTCTTCGTCTTCGTGGCGGTCAATA 10781 Query 111332 AA 111333 || Sbjct 10782 AA 10783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421803211159504