Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F000825725.1_202014-12-08] 1,554 sequences; 49,238,270 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq686 138 3e-27 seq80 138 3e-27 seq769 136 1e-26 seq243 132 1e-25 seq71 132 1e-25 seq83 116 9e-21 >seq686 Length=24674 Score = 138 bits (152), Expect = 3e-27 Identities = 162/217 (75%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||| ||||| || ||||| || || || || || || | || || ||| Sbjct 10546 AAAATGC---AAATCTTCGTAAAGACTCTTACCGGCAAGACAATTACTTTAGAAGTTGAA 10602 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || || | ||||| || ||||| ||||||||||| || || ||||| |||||||| Sbjct 10603 TCTTCTGATAGTATCGAAAATGTCAAGCAAAAGATTCAAGATAAGGAAGGTATCCCTCCT 10662 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 ||||| ||||| || || ||||| || ||||| |||||||| || | ||| | ||| Sbjct 10663 GACCAACAACGTCTCATTTTCGCTGGTAAACAACTCGAAGACGGTCGTACTTTGAGTGAT 10722 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTTT 178131 |||||| | ||||||||||| || || || |||| || Sbjct 10723 TATAACATTCAAAAAGAATCTACTCTTCA-CTTGGTT 10758 >seq80 Length=97372 Score = 138 bits (152), Expect = 3e-27 Identities = 122/150 (81%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || || |||||||| || |||||||| ||||||||||| ||||| ||||| || ||||| Sbjct 13820 AGTTCCGACACCATTGACAACGTCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCTCCT 13761 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGA 178093 ||||| ||||| |||||||| ||||| ||||| |||||||| || | || |||| ||| Sbjct 13760 GACCAACAACGTCTTATCTTTGCCGGTAAACAACTCGAAGACGGTCGTAC-CTTGAGCGA 13702 Query 178094 TTATAACGTCCAAAAAGAATCAACACTGCA 178123 |||||| ||||||| ||||| || || || Sbjct 13701 CTATAACATCCAAAAGGAATCTACTCTCCA 13672 >seq769 Length=21522 Score = 136 bits (150), Expect = 1e-26 Identities = 154/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || || || ||||| || || || | || || ||| || ||| Sbjct 14072 CAAATCTTTGTCAAGACACTTACTGGAAAGACAATTACTTTAGAAGTTGAATCTTCTGAC 14131 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || |||||||||||||| ||||| ||||| || ||||| || || ||| Sbjct 14132 ACTATCGACAATGTAAAACAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAACAA 14191 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || ||||| ||||||||||| | || || ||| |||||| | Sbjct 14192 CGTCTCATCTTTGCTGGTAAACAACTCGAAGATGGTCGTACCCTAAGCGACTATAACATT 14251 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| ||||| || || || |||| Sbjct 14252 CAAAAGGAATCTACTCTTCA-CTTG 14275 >seq243 Length=56764 Score = 132 bits (146), Expect = 1e-25 Identities = 150/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || || || ||||| | ||| || | || || || || ||| Sbjct 38074 CAAATCTTTGTCAAGACACTTACTGGAAAGATGATTACTTTAGAAGTCGAGTCTTCTGAC 38015 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || |||||||| ||||| ||||| ||||| || ||||| || || ||| Sbjct 38014 ACTATCGACAATGTAAAACAAAAAATTCAAGACAAGGAAGGTATTCCTCCTGATCAACAA 37955 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || ||||| ||||||||||| | || || ||| |||||| || Sbjct 37954 CGTCTCATCTTTGCTGGTAAACAACTCGAAGATGGTCGTACCCTAAGCGACTATAACATC 37895 Query 178104 CAAAAAGAATCAACACTGCAT 178124 ||||| ||||| || || ||| Sbjct 37894 CAAAAGGAATCTACTCTTCAT 37874 >seq71 Length=102704 Score = 132 bits (146), Expect = 1e-25 Identities = 159/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||| ||||| || ||||| || || || ||||| || | || || ||| Sbjct 21709 AAAATGC---AAATCTTCGTAAAGACTCTTACCGGCAAGACGATTACTTTAGAAGTCGAA 21653 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || || | ||||| || ||||| ||||||||||| ||||| ||||| |||||||| Sbjct 21652 TCTTCTGATAGTATCGAAAATGTCAAGCAAAAGATTCAAGACAAGGAAGGTATCCCTCCT 21593 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 ||||| || |||||||||| || || ||||| || || ||||| | ||| | || Sbjct 21592 GACCAACAGAGACTTATCTTTGCTGGTAAACAACTTGAGGATGGTCGTACTTTGAGTGAC 21533 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || ||| ||||||| ||||| || || || |||| Sbjct 21532 TACAACATCCAAAAGGAATCTACCCTTCA-CTTG 21500 >seq83 Length=96909 Score = 116 bits (128), Expect = 9e-21 Identities = 88/104 (85%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || || |||||||| || |||||||| ||||||||||| ||||| ||||| || ||||| Sbjct 42058 AGTTCCGACACCATTGACAACGTCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCTCCT 41999 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 ||||| ||||| |||||||| ||||| ||||| |||||||| || Sbjct 41998 GACCAACAACGTCTTATCTTTGCCGGTAAACAACTCGAAGACGG 41955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203707232959476