Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F002083735.1_202017-04-12] 595 sequences; 24,077,254 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq57 149 9e-31 seq9 129 9e-25 seq118 111 2e-19 >seq57 Length=110979 Score = 149 bits (164), Expect = 9e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | |||||||| || || || || || ||| |||| | || | | Sbjct 11440 ATGCAAATCTTTGTCAAGACACTTACTGGAAAGACGATTACTTTAGAAGTCGAGTCTTCT 11381 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| ||||||| ||||||||||| || |||||||| || ||||||||| Sbjct 11380 GACACTATCGACAATGTAAAACAAAAAATTCAAGACAAGGAAGGTATTCCTCCTGATCAA 11321 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | || || ||||| || |||||| | || ||| |||| || || || ||||| Sbjct 11320 CAACGTCTCATCTTTGCTGGTAAACAACTCGAAGATGGTCGTACCCTAAGCGACTATAAC 11261 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| ||||| ||| | |||||||| | ||| | || |||||||| Sbjct 11260 ATCCAAAAGGAATCTACTCTTCATTTGGTCCTTCGTCTCCGTGGTGGTAT 11211 >seq9 Length=217876 Score = 129 bits (142), Expect = 9e-25 Identities = 329/499 (66%), Gaps = 20/499 (4%) Strand=Plus/Minus Query 205308 ATCTACTTGTCtttttatttttaattttGGAAATGGGTTTGGTGTACGTTCTAATTGttt 205367 |||||||| | || |||||||| | || || || || ||| ||||| | |||| Sbjct 9172 ATCTACTTTACGGTTGATTTTTAAAGTAGGGAAAGGCTTGGGTTCACGTTGAATCTGTTG 9113 Query 205368 ttttAATCCATTAATATGATTAACATATATATGTGCATTACCAATATTATGAATAAATTC 205427 || | | | | || ||||| ||||| | ||||| || || || |||| || ||||| Sbjct 9112 CTTAAGTGCGTCAAGATGATCCACATAAACATGTGTATCGCCCATTGTATGTATGAATTC 9053 Query 205428 ATATGGTTTTAAATTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAAC 205487 | || | | || |||| ||| |||||||| ||||| | |||| |||| Sbjct 9052 ACCAGGATCAAGATCTGTTACATGCGCAATCATGCGTGTCAAAAGTGCATAAGAGGCAAT 8993 Query 205488 ATTAAATGGTACACCTAAACCCATATCAGCTGATCTTTGATACAT-------------TT 205534 ||| || || ||||| | ||||||||| || | |||||| | || Sbjct 8992 ATTGAAAGGAACACCCAGTCCCATATCACAAGAACGTTGATAAAGCACACAAGACAACTT 8933 Query 205535 GACATGTAAGATAT--TTATT---ATTAATTACATGAAATTGTACAAAACA-ATGACAAG 205588 | || || | || | | |||| ||||| |||||| |||||| |||||||| Sbjct 8932 GGCACGTCCGCCATCCTGAGGTGGATTAGATACATAAAATTG-ACAAAAGGCATGACAAG 8874 Query 205589 GTGGTATAACCATATTTTCAACATCTATAGGATTCCAGGCTGTTAATATTATATTTCTAG 205648 | |||| | |||| | || |||| ||| ||||| |||| | || || | | | Sbjct 8873 GCGGTAAAGCCATGATAGGAATATCTGCAGGGTTCCATGCTGACAGAATGATTCTGCGAT 8814 Query 205649 ATTCAGGtttattttttattttatttatAATATGTGTTAATTGATCAAATCCTTGATTTG 205708 ||| || |||||||| | | || | ||| ||||||||||| ||||| || Sbjct 8813 CAGTAGGATTGTTTTTTATAGTGTCGATCACTTGTTGTAATTGATCAATGCCTTGCCCTG 8754 Query 205709 TATAATTTGTATCCATATCAATATATTTAGCACCAAAATGACGCCATTGAAAACCATAAA 205768 |||||| ||||| ||||| ||||| |||||||| || | ||||||||| || || | Sbjct 8753 TATAATCAGTATCACAATCAACGTATTTGGCACCAAAGTGTCTCCATTGAAATCCGTAGA 8694 Query 205769 CTGGACCTAAATCACCTTC 205787 |||| || | ||||||||| Sbjct 8693 CTGGTCCAAGATCACCTTC 8675 >seq118 Length=67844 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| ||| | || || || || |||||||| |||||||| || |||||||| Sbjct 18955 TGACACCATTGACAATGTCAAGCAAAAGATCCAAGATAAGGAAGGTATCCCTCCTGATCA 19014 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | || ||||| || || |||||| | || || |||| || || ||||| || Sbjct 19015 ACAACGTCTCATTTTCGCCGGTAAACAACTCGAAGACGGTCGTACCTTGAGTGATTACAA 19074 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| ||||| || | || |||||| | ||| | || |||||||| Sbjct 19075 CATTCAAAAGGAATCTACCCTTCACTTGGTTCTCCGTCTTCGTGGTGGTAT 19125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755450381296000