Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F002083735.1_202017-04-12] 595 sequences; 24,077,254 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq57 125 7e-24 seq118 102 8e-17 seq15 96.9 3e-15 seq10 95.1 1e-14 >seq57 Length=110979 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || || |||| ||||| || ||||| |||||||| ||||| Sbjct 11214 CCACCACGGAGACGAAGGACCAAATGAAGAGTAGATTCCTTTTGGATGTTATAGTCGCTT 11273 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||||| |||||||||||| |||| |||||||| ||||| ||||| Sbjct 11274 AGGGTACGACCATCTTCGAGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGAGGA 11333 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||||||||||||| | || | ||||| | | ||| || Sbjct 11334 ATACCTTCCTTGTCTTGAATTTTTTGTTTTACATTGTCGATAGTGTCAGAAGACTCGACT 11393 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | |||||| || || | || || || || |||||||| Sbjct 11394 TCTAAAGTAATCGTCTTTCCAGTAAGTGTCTTGACAAAGATTTGCAT 11440 >seq118 Length=67844 Score = 102 bits (112), Expect = 8e-17 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| ||||||| ||||| || ||||||||||| ||||| ||| Sbjct 19122 CCACCACGAAGACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCACTC 19063 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||||||| |||||||| || | || |||||||| ||||| ||||| Sbjct 19062 AAGGTACGACCGTCTTCGAGTTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGG 19003 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 || ||||| || || ||| ||||| || Sbjct 19002 ATACCTTCCTTATCTTGGATCTTTTGCTT 18974 >seq15 Length=177086 Score = 96.9 bits (106), Expect = 3e-15 Identities = 362/559 (65%), Gaps = 9/559 (2%) Strand=Plus/Minus Query 153964 GCATAAATATATCGGGAACCCATAGGGCGTTCATCAGGTCGCGCGCTTTCGTGTCTTCGC 154023 |||| || | ||| |||||||| || || | | ||| || || ||| | | || || Sbjct 93114 GCATGAAAAGATCAGGAACCCAGAGAGCATAGAACAGATCACGAGCTCTGATTTCGTCTT 93055 Query 154024 TGCCAATGTTTCGACGCATGTGTAAGACGTCCATTATGTCGCAATGCCACGGTTCCACGT 154083 | |||| |||| |||| || ||| | | | ||||| |||||| ||||||| || Sbjct 93054 TACCAAAGTTTTTTCGCAAGTCTAAAAAGGTGAAAATGTCTGCATGCCAGGGTTCCAAGT 92995 Query 154084 AAACTGCTTGAGCGCCTTTACGCTTG---CCGCCCTGATTTACGTGACGCACCATATTGT 154140 | | ||| ||||| |||||| ||||| |||| || | ||| || |||||| Sbjct 92994 ACATTGCGAATGCGCCCGGACGCTTATTACCGCCTTGATCGACATAACGAGCCGTATTGT 92935 Query 154141 TGAAAACCCGAAGCATGGGTAGCAGACCGCTGGCGGTACCGTTTGTAGATTTAATCT-TG 154199 ||||||| || |||||||| | | ||| ||| | |||||| || ||| | || Sbjct 92934 TGAAAACACGGAGCATGGGCAATAATCCGTTGGAGTAACCGTTGGTGCCGGCAATGTATG 92875 Query 154200 CTGTTGCGGCCTCGAACGCTGTTTACGTTTAATCCAATACCGCC-GCCGTGTTTGGAGAT 154258 | | | |||| | ||| | ||| || ||||||||||| || || |||||||| Sbjct 92874 AT-CCACTAGCACGAATGTTGTGAATGTTCAAGCCAATACCGCCTGCTGT-CTTGGAGAT 92817 Query 154259 CATGGCGCAATCGTTCAATGTGTTATAGATACCACGAATGCTATCGCTTTCCATGGTCAA 154318 || || || | || | ||||||||| || ||| | |||||| | Sbjct 92816 TTGAGCACAGATTTTGAGCGTCTCATAGATACCTTCGATCGAATCTTCCTTCATGGTGAG 92757 Query 154319 TAGGAAACATGAACTCATCTGCGGAGTTGGAGTGCCGGCAGCAAACATGGTCGGGCTTGC 154378 | |||||| ||| ||| || ||| || ||||| ||| ||| | || || || || Sbjct 92756 CAAGAAACAAGAAGACATTTGGGGACGAGGTGTGCCTGCATTAAATAAAGTAGGACTAGC 92697 Query 154379 GTGCGTGTA-CATCTTTGTGCTCAAAAATTTATAAGACTTTATGGCATTATCAATGTCGT 154437 ||| || | |||||| | || || || || | || || || |||||| ||| Sbjct 92696 GTGTGTAAAGTATCTTTCAG-ACATCAAGTTGTATGTCTCAATAGCTGCATCAATATCGG 92638 Query 154438 CTCCAAAGATACCTAGAGCTATACGCATGTGCATGTGTTGAATCCTTTCGGCAACTTTTT 154497 |||| |||||| | || | ||||||| || |||||| | ||| |||| || Sbjct 92637 TTCCATGGATACCGATCGCAACACGCATGATCAAATGTTGAGGACGTTCAGCAATCTTGC 92578 Query 154498 CGTTAATTTTTATCAGGTA 154516 ||| ||| || | ||||| Sbjct 92577 CGTCAATCTTGAGAAGGTA 92559 >seq10 Length=205532 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||||| ||||| || ||||| ||||| || || ||| Sbjct 110446 CCACCACGAAGACGAAGGACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCACTC 110387 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | || || || |||||||||||| |||| || | || || || ||||| Sbjct 110386 AAAGTACGACCATCCTCAAGTTGTTTACCAGCAAAGATAAGTCTCTGTTGGTCAGGAGGG 110327 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| || ||||| || | | ||| | | || | | || || Sbjct 110326 ATACCTTCCTTGTCTTGAATCTTTTGCTTGACATTTTCGATACTATCAGAAGATTCGACT 110267 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | |||||||||||| | || |||||||| |||||||| Sbjct 110266 TCTAAAGTAATCGTCTTGCCGGTAAGAGTCTTTACGAAGATTTGCAT 110220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496060310524000