Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F002083735.1_202017-04-12] 595 sequences; 24,077,254 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq80 179 4e-40 >seq80 Length=87281 Score = 179 bits (198), Expect = 4e-40 Identities = 548/839 (65%), Gaps = 16/839 (2%) Strand=Plus/Plus Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 |||||| ||| || | |||||||||||||| || || |||| || || || | || Sbjct 44259 TTGATAATCAGAGACACGCTTTTCAAAGAAGTTGGTCTTGCCTTGAAGAGAGATCATGTC 44318 Query 13643 CATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 13702 |||||| ||||||||||| | | ||| | | || || | || || | | | | Sbjct 44319 CATAAAGTCAAATGGATTGGTAGCCATGTAAATCTTGTCGAATCCAAGAGCAACCATGAG 44378 Query 13703 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13762 | |||||||| || || || || ||| |||| || || | ||||| || || || Sbjct 44379 ACGATCAGCAACGAATTCGATGTACTGACACATCAAGGCAGAGTTCATGCCGATGAGAGC 44438 Query 13763 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAAT 13822 || |||| || || |||||||||| ||| || ||||| || || ||| Sbjct 44439 GACGGGAAGAGCATCCGTCAAAAATTCTTGTTCAATGCTGACAGCTTCCAAGATGATATC 44498 Query 13823 TGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATC 13882 | | || | |||| | | ||||| |||| | | ||| ||||| || Sbjct 44499 CTTGACGCGTTCTTGGCTAGGACGCTTACGAAGATGGGTAAATAAAAGACAAGCAAAGTC 44558 Query 13883 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 13942 | |||||| || ||||| | || || | ||| || ||||| || || ||||||| Sbjct 44559 AGTATGAAGACCTTCATCACGACAGATCAATTCATTGCTGAATGTCAAACCGGGCATCAG 44618 Query 13943 TCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAAC 14002 || |||||||| | |||||| || | |||||| || || || ||||| || || || || Sbjct 44619 ACCACGTTTTTTGAGCCAAAAGATGGAAGCAAAGGAACCAGAGAAGAAGATACCTTCGAC 44678 Query 14003 TGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCT 14062 |||||||| || | | ||||| |||| || | || | || |||||||| Sbjct 44679 AGCAGCAAAGGCAACAAGACGTTCAGCAAAAGAACCGTTAGAG---GAAATCCATTTGAA 44735 Query 14063 AGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTC 14122 ||||| |||| ||| | || ||| || || || ||||||||| ||| | ||| Sbjct 44736 GGCCCAATCAGCCTTTCTCTTGATACAAGGGATAGTGTCAATAGCAGAAAAGAGCATTTC 44795 Query 14123 CTTCTCTT--TAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGT 14180 ||||||| | || |||| || | || ||||| | | || || |||| | ||| Sbjct 44796 TTTCTCTTGGTTGTCTTTGATAT--AAGTGTCAATCAAAAGACTGTAAGTTTCTGCGTGA 44853 Query 14181 ATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCG-ACCATTGTACTTC 14239 || ||||| || || ||||| ||||| || ||| ||||||| | | ||| ||||| Sbjct 44854 ATATTTTCAATCATGATTTGAAAGCCATAGAAACATTTAGCTTCAGGAATCTTG-ACTTC 44912 Query 14240 CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGC 14299 |||| ||| |||| ||||||||||| || ||||| | | ||||| || || Sbjct 44913 ATCACAAAAGTTTTGAACCAAGTTTTCATTAACAATGCCATCTGAACCAGCAAAGAAGGC 44972 Query 14300 CAATATGTTTTTAATAAAGTA---TTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAA 14356 ||| | | |||||| | || | ||| | | |||| |||||| || | Sbjct 44973 CAAAACGCGAGAGATAAAGAAACGTTCGTTTTCGGTCATCTTGTTTTCCCAATC--ATGA 45030 Query 14357 A--TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATA 14413 | ||||| | ||| | ||| ||| |||||||||| ||| ||||||| ||||| Sbjct 45031 AGGTCCTTGCTCAAATCGATTTCTTCAGCTGTCCAAAAGGAAGCTTCAGCTTTCTTATA 45089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479724432023000