Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F002083735.1_202017-04-12] 595 sequences; 24,077,254 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq80 170 3e-37 seq15 116 5e-21 >seq80 Length=87281 Score = 170 bits (188), Expect = 3e-37 Identities = 545/840 (65%), Gaps = 18/840 (2%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| || | || || || ||| | || ||||||||||| | ||||| ||||| || Sbjct 45101 ATCTGGCAATTCTATAAGAAAGCTGAAGCTTCCTTTTGGACAGCTGAAGAAATCGATTTG 45042 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||||||||| | |||||||| | |||| |||| || || ||||| || Sbjct 45041 AGCAAGGACCTTCATGATTGGGAAAACAAGATGACCGAAAACGAACGTTTCTTTATCTCT 44982 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 | | |||||||||||||||| || || ||||| || || || || || || | | Sbjct 44981 CGCGTTTTGGCCTTCTTTGCTGGTTCAGATGGCATTGTTAATGAAAACTTGGTTCAAAAC 44922 Query 125199 TTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATT 125258 || | | | || | | ||||| || | || || || || || |||||||||||| Sbjct 44921 TTTTGTGATGAAGTCAAGATTCCTGAAGCTAAATGTTTCTATGGCTTTCAAATCATGATT 44862 Query 125259 GAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAA 125318 || || | ||| | |||| ||| | ||||||||| || || || ||| Sbjct 44861 GAAAATATTCACGCAGAAACTTACAGTCTTTTGATTGACACTTATATCAAAGACAACCAA 44802 Query 125319 CGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAA 125378 ||| | ||||||||| || || ||||| | || | ||| | ||||||| | Sbjct 44801 GAGAAAGAAATGCTCTTTTCTGCTATTGACACTATCCCTTGTATCAAGAGAAAGGCTGAT 44742 Query 125379 TGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTC 125438 |||| | ||||| | | || ||| | || || | || || || || Sbjct 44741 TGGGCCTTCAAATGGAT---TTCCTCTAACGGTTCTTTTGCTGAACGTCTTGTTGCCTTT 44685 Query 125439 GCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAG 125498 || || || || || |||||||| || ||| ||||| |||||||||||||||| || Sbjct 44684 GCTGCTGTCGAAGGTATCTTCTTCTCTGGTTCCTTTGCTTCCATCTTTTGGCTCAAAAAA 44625 Query 125499 CGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTA 125558 || || || |||||||| |||| ||| || || || || | ||| || || || || Sbjct 44624 CGTGGTCTGATGCCCGGTTTGACATTCAGCAATGAATTGATCTGTCGTGATGAAGGTCTT 44565 Query 125559 CACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCC-AG 125617 || ||||||||| ||| | ||| | | |||| ||| || | ||| || Sbjct 44564 CATACTGACTTTGCTTGTCTTTTATTT---ACCCATCTTCGT---AAGCG----TCCTAG 44515 Query 125618 CGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAAC 125677 | | ||| |||| | || | || || || || || |||||||| ||| | || Sbjct 44514 CCAAGAACGCGTCAAGGATATCATCTTGGAAGCTGTCAGCATTGAACAAGAATTTTTGAC 44455 Query 125678 CGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGA 125737 || | || || ||| | || |||||||||| | ||||| ||||||| || Sbjct 44454 GGATGCTCTTCCCGTCGCTCTCATCGGCATGAACTCTGCCTTGATGTGTCAGTACATCGA 44395 Query 125738 GTTTGTGGCAGATCGTCTACTG--TACGAGTTGATTGGCCGCAAGATTTACAACGCCAAG 125795 || || || |||||||| || | | | |||| | ||||||||||| || | Sbjct 44394 ATTCGTTGCTGATCGTCTCATGGTTGCTCTTGGATT--CGACAAGATTTACATGGCTACC 44337 Query 125796 AATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 ||||| ||||| || ||| || || || || | || ||||||||||| || || ||| Sbjct 44336 AATCCATTTGACTTTATGGACATGATCTCTCTTCAAGGCAAGACCAACTTCTTTGAAAAG 44277 >seq15 Length=177086 Score = 116 bits (128), Expect = 5e-21 Identities = 342/520 (66%), Gaps = 14/520 (3%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAAT--GTCAC 96864 || ||||| || ||| || || |||| |||||| | | | ||| |||| | | | Sbjct 92889 ACCAACGGTTACTCCAACGGATTATTGCCCATGCTCCGTGTTTTCAA--CAATACGGCTC 92946 Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924 | || || || ||||| ||||| || || ||||| | || | ||||||||||| | Sbjct 92947 GTTATGTCGATCAAGGCGGTAATAAGCGTCCGGGCGCATTCGCAATGTACTTGGAACCCT 93006 Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA- 96983 |||| || ||| |||| |||| | || |||| ||||||| ||| | |||| | | Sbjct 93007 GGCATGCAGACATTTTCACCTTTTTAGACTTGCGAAAAAACTTTGG---TAAAGACGAAA 93063 Query 96984 --CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCA 97041 |||| | || |||| ||||| |||||||| || ||| | |||||| |||| |||| Sbjct 93064 TCAGAGCTCGTGATCTGTTCTATGCTCTCTGGGTTCCTGATCTTTTCATGCAGCGTGTCA 93123 Query 97042 ACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCT 97101 |||||||| | ||| ||| | |||||| | | || || | || || Sbjct 93124 GAGACGGTGGTGATTGGTCTCTATTTTGCCCCAATGAAGCTCCTGGATTACATGAAGTCT 93183 Query 97102 GGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGA--TACGTGAG 97159 |||| || || |||| || || ||||| | || || || || | || Sbjct 93184 GGGGTGACGAATTTGTTGCTCTCTATGAAAAATACGAACGTGAAGGAAGAGCTA-GAGAA 93242 Query 97160 ACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAAC 97219 || | || | || | | | |||||| | ||||| || ||| || |||||||| | Sbjct 93243 AC-AATCAAGGCTCAAAAGCTGTGGTATGCCATTTTGGAGGCACAAACGGAGACTGGTAA 93301 Query 97220 TCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCAC 97279 ||| | ||| ||||| |||||| | || | || || || || | ||||||| || Sbjct 93302 TCCATTCATACTCTATAAGGATGCTTGTAACAGAAAGAGTAATCAGCAAAACTTGGGTAC 93361 Query 97280 CATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTAC 97319 |||||| || ||| ||||| || |||||||| || ||| Sbjct 93362 GATCAAGTGCAGCAACCTGTGTACAGAAATTGTTGAATAC 93401 Score = 84.2 bits (92), Expect = 3e-11 Identities = 163/235 (69%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 96806 AACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCAC 96864 ||||||||| | | ||| |||| | | |||||||||||| | | |||| || || | | Sbjct 133146 AACAAACGGTACCTCCAATGGCATCATTCCAATGCTCAGAGTCTTTAATGACACTG-CTC 133088 Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTA---TAGCCGTCTACTTGGAAC 96921 | | || ||||| || || |||||| || || || | || |||||| | |||| Sbjct 133087 GCTTTGTGACACAAGGAGGTGGTAAACG--CAA-CGGTAACTTTGCTGTCTACATAGAAC 133031 Query 96922 CTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGG 96981 ||||||| | ||||| || || || | || ||||||| ||| ||| ||| || Sbjct 133030 CTTGGCATGTCGACGTATTCGAATTCTTGGACTTGCGCAAGAACAATGGTGCTGAGGAAA 132971 Query 96982 CACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCG 97036 || || | |||||||| | | | | |||||||| ||| | ||||||||||| Sbjct 132970 TGCGCGCACGCGACTTGTTCTTGGGATTATGGGTGCCTGATCTTTTCATGAAGCG 132916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741053688372200