Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F002083735.1_202017-04-12] 595 sequences; 24,077,254 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq80 145 7e-30 >seq80 Length=87281 Score = 145 bits (160), Expect = 7e-30 Identities = 466/715 (65%), Gaps = 16/715 (2%) Strand=Plus/Plus Query 12986 TCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTTACA 13045 |||||||| || || |||||||| ||| || || ||||||| || || | || Sbjct 44383 TCAGCAACGAATTCGATGTACTGACACATCAAGGCAGAGTTCATGCCGATGAGAGCGACG 44442 Query 13046 GGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTCTCTT 13105 || | ||| || || ||||| | || ||| || || ||||| | | || || ||| Sbjct 44443 GGAAGAGCATCCGTCAAAAATTCTTGTTCAATGCTGACAGCTTCCAAGATGATATC-CTT 44501 Query 13106 ATTACGTTCT---CTAATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAAATCA 13162 |||||| ||| ||| | || ||||| |||| | | ||| ||||| ||| Sbjct 44502 GACGCGTTCTTGGCTA--GGACGCTTACGAAGATGGGTAAATAAAAGACAAGCAAAGTCA 44559 Query 13163 CAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGC 13222 || | |||||||| | || || | || || ||||| | ||| ||||| || Sbjct 44560 GTATGAAGACCTTCATCACGACAGATCAATTCATTGCTGAATGTCAAACCGGGCATCAGA 44619 Query 13223 CCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACT 13282 || |||||||| | |||||| || | |||||| ||||| || || || || ||||| || Sbjct 44620 CCACGTTTTTTGAGCCAAAAGATGGAAGCAAAGGAACCAGAGAAGAAGATACCTTCGACA 44679 Query 13283 GCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCACTTTCTG 13342 || ||||| || | | | |||| || | | || || | ||||| || | Sbjct 44680 GCAGCAAAGGCAACAAGACGTTCAGCAAAAGAACCGTT---AGAGGAAATCCATTTGAAG 44736 Query 13343 GCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAttt 13402 ||||| | || ||| || | || ||| | || || || ||| | |||| Sbjct 44737 GCCCAATCAGCCTTTCTCTTGATACAAGGGATAGTGTCAATAGCAGAAAAGAGC--ATTT 44794 Query 13403 ttttC-CTTACT-GTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAA 13460 |||| ||| | |||| |||||||| || ||||| | || || |||||| |||| Sbjct 44795 CTTTCTCTTGGTTGTCTTTGATATAAGTGTCAATCAAAAGACTGTAAGTTTCTGCGTGAA 44854 Query 13461 TATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGG 13520 ||||||| ||| ||||| || ||||| |||||| |||| || | | || ||||| Sbjct 44855 TATTTTCAATCATGATTTGAAAGCCATAGAAACATTTAGCTTCAGGAATCTTGACTTCAT 44914 Query 13521 AGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAA 13580 |||| ||| | |||||||| ||||| || || || | ||||||| || || | Sbjct 44915 CACAAAAGTTTTGAACCAAGTTTTCATTAACAATGCCATCTGAACCAGCAAAGAAGGCCA 44974 Query 13581 GTATGTGCTTAATAAAttttttttCGTTTTCTGACAAC---TTTAACCAATCTGGAAAAT 13637 | | | ||||| ||||||||| | || | ||| |||||| ||| | Sbjct 44975 AAACGCGAGAGATAAAGAAACGTTCGTTTTCGGTCATCTTGTTTTCCCAATCATGAAGGT 45034 Query 13638 CTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATA 13692 | || ||||| | || ||| | |||||||| ||||| |||| |||||||| Sbjct 45035 CCTTGCTCAAATCGATTTCTTCAGCTGTCCAAAAGGAAGCTTCAGCTTTCTTATA 45089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430979274704190