Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F002083735.1_202017-04-12] 595 sequences; 24,077,254 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq80 188 2e-42 seq57 150 4e-31 seq118 98.7 2e-15 >seq80 Length=87281 Score = 188 bits (208), Expect = 2e-42 Identities = 317/456 (70%), Gaps = 2/456 (0%) Strand=Plus/Minus Query 268841 TTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTA 268900 ||||| ||| || | || || ||||| | | ||||| || ||||| ||||| | Sbjct 44990 TTTATCTCTCGCGTTTTGGCCTTCTTTGCTGGTTCAGATGGCATTGTTAATGAAAACTTG 44931 Query 268901 GTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAG 268960 || | || || ||| | || || ||||||||||||| | |||||| || || || || Sbjct 44930 GTTCAAAACTTTTGTGATGAAGTCAAGATTCCTGAAGCTAAATGTTTCTATGGCTTTCAA 44871 Query 268961 ATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGAT 269020 || || ||||||||||| |||| | |||||||| || || || |||||||| | Sbjct 44870 ATCATGATTGAAAATATTCACGCAGAAACTTACAGTCTTTTGATTGACACTTATATCAAA 44811 Query 269021 GATAACAACGA-AAAGAAAAGACTATTTTCTTCTATGAGAACTATGGACTGTGTGAGaaa 269079 || ||| | || ||||||| | || |||||| |||| ||||| ||| | | | Sbjct 44810 GACAACCAAGAGAAAGAAATG-CTCTTTTCTGCTATTGACACTATCCCTTGTATCAAGAG 44752 Query 269080 aaaaTCTGAATGGGCTCTGAAATGGATAAACGATAGCGCGCCTTACGGAGAAAGGTTAGT 269139 ||| |||| ||||| | |||||||| | || || ||| | ||| | | || Sbjct 44751 AAAGGCTGATTGGGCCTTCAAATGGATTTCCTCTAACGGTTCTTTTGCTGAACGTCTTGT 44692 Query 269140 TGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTT 269199 ||| ||||| ||||| |||||||| ||||| || || || ||||| | ||||||||| | Sbjct 44691 TGCCTTTGCTGCTGTCGAAGGTATCTTCTTCTCTGGTTCCTTTGCTTCCATCTTTTGGCT 44632 Query 269200 GAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGA 269259 || ||| | || || ||||| || || || ||| || |||||||| | | || || Sbjct 44631 CAAAAAACGTGGTCTGATGCCCGGTTTGACATTCAGCAATGAATTGATCTGTCGTGATGA 44572 Query 269260 AGGTTTACACTGCGACTTCGCTTGTTTATTATTTAC 269295 |||| | || ||||| |||||| | |||||||| Sbjct 44571 AGGTCTTCATACTGACTTTGCTTGTCTTTTATTTAC 44536 >seq57 Length=110979 Score = 150 bits (166), Expect = 4e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || | ||| | |||||||| || || || |||||||| ||| || | ||| || Sbjct 11228 AAGGACCAAATGAAGAGTAGATTCCTTTTGGATGTTATAGTCGCTTAGGGTACGACCATC 11287 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| |||||||| |||||||| || || | |||||||||||||| || ||||| || || Sbjct 11288 TTCGAGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGAGGAATACCTTCCTTGTC 11347 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||| ||| ||||||||| || | || || || || || |||| ||||| || Sbjct 11348 TTGAATTTTTTGTTTTACATTGTCGATAGTGTCAGAAGACTCGACTTCTAAAGTAATCGT 11407 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| ||||||||||| || ||||| || ||||| Sbjct 11408 CTTTCCAGTAAGTGTCTTGACAAAGATTTGCAT 11440 >seq118 Length=67844 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| || ||||| || || ||| | || | ||||||||| |||||||| || Sbjct 19092 GTAGATTCCTTTTGAATGTTGTAATCACTCAAGGTACGACCGTCTTCGAGTTGTTTACCG 19033 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || | |||||||||||||| || ||||| ||||| || |||||| || Sbjct 19032 GCGAAAATGAGACGTTGTTGATCAGGAGGGATACCTTCCTTATCTTGGATCTTTTGCTTG 18973 Query 104483 ACATTTTCTACGGTATC 104499 ||||| || | ||| || Sbjct 18972 ACATTGTCAATGGTGTC 18956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151389622386260