Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F002083735.1_202017-04-12] 595 sequences; 24,077,254 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq316 210 3e-50 seq96 206 4e-49 seq346 179 6e-41 >seq316 Length=19262 Score = 210 bits (232), Expect = 3e-50 Identities = 218/282 (77%), Gaps = 3/282 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCG-CAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||||||||| |||| |||||| |||||||| ||||| || |||||||| ||||| Sbjct 17768 GCCAAGCGTCATCGTAAGAT-TCTTCGTGATAACATTCAAGGTATTACCAAGCCTGCTAT 17826 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| || ||||||||||| ||||||||| ||||||| | |||||||||| | Sbjct 17827 TCGTCGTCTTGCCCGTCGTGGTGGTGTCAAGCGTATCTCTGGTCTCATCTATGAAGAAAC 17886 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| | || |||||| ||||||| | | |||||| | ||||||| || || || || Sbjct 17887 TCGTAACGTCTTGAAGTCCTTCCTCGAAAACGTTATTCGTGATGCTGTCACTTACACTGA 17946 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | |||||||| ||||| ||||| | |||||||| | || | ||||| Sbjct 17947 ACATGCCAAGAGAAAGACTGTTACCTCTTTGGATGTTGTCTATGCTCTCAAGAGACAAGG 18006 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATC-TTCTAATCAAA 16712 ||||| | |||||||| || ||||| | |||| ||| || Sbjct 18007 CCGTACCCTCTATGGTTTCGGTGGTTAAGCATTCTCATCTAA 18048 >seq96 Length=80948 Score = 206 bits (228), Expect = 4e-49 Identities = 208/268 (78%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCG-CAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||||||||| |||| |||||| |||||||| ||||| || |||||||| ||||| Sbjct 60542 GCCAAGCGTCATCGTAAGAT-TCTTCGTGATAACATTCAAGGTATTACCAAGCCTGCTAT 60600 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| || ||||||||||| ||||||||| ||||||| | |||||||||| | Sbjct 60601 TCGTCGTCTTGCCCGTCGTGGTGGTGTCAAGCGTATCTCTGGTCTCATCTATGAAGAAAC 60660 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| | || ||||||| |||||| | | |||||| | ||||||| | ||||| || Sbjct 60661 TCGTAACGTCTTGAAGACTTTCCTCGAAAACGTTATTCGTGATGCTGTTACTTATACTGA 60720 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | |||||||| ||||| ||||| | |||||||| | || | ||||| Sbjct 60721 ACATGCCAAGAGAAAGACTGTTACCTCTTTGGATGTTGTCTATGCTCTCAAGAGACAAGG 60780 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||| | |||||||| || ||||| Sbjct 60781 CCGTACCCTCTATGGTTTCGGTGGTTAA 60808 >seq346 Length=14499 Score = 179 bits (198), Expect = 6e-41 Identities = 198/261 (76%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCG-CAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||||||||| |||| |||||| |||||||| ||||| || |||||||| ||||| Sbjct 8143 GCCAAGCGTCATCGTAAGAT-TCTTCGTGATAACATTCAAGGTATTACCAAGCCTGCTAT 8201 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| || ||||||||||| ||||||||| ||||||| | |||||||||| | Sbjct 8202 TCGTCGTCTTGCCCGTCGTGGTGGTGTCAAGCGTATCTCTGGTCTCATCTATGAAGAAAC 8261 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || ||||||| ||||| | | ||||| | ||||||| | ||||| || Sbjct 8262 CCGTAACGTGTTGAAGACTTTCCTTGAAAATGTTATTCGTGATGCTGTTACTTATACTGA 8321 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | |||||||| || ||| ||||| | |||||||| | || | ||||| Sbjct 8322 ACATGCCAAGAGAAAGACTGTTACTTCCTTGGATGTTGTCTATGCTCTCAAGAGACAAGG 8381 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 |||| | || ||||| || Sbjct 8382 TCGTACTCTCTACGGTTTCGG 8402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074655987335