Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F002083735.1_202017-04-12] 595 sequences; 24,077,254 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq80 154 2e-32 >seq80 Length=87281 Score = 154 bits (170), Expect = 2e-32 Identities = 547/845 (65%), Gaps = 28/845 (3%) Strand=Plus/Plus Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246 |||||||||| || | ||||| || || || ||||| |||| | || || || Sbjct 44259 TTGATAATCAGAGACACGCTTTTCAAAGAAGTTGGTCTTGCCTTGAAGAGAGATCATGTC 44318 Query 21247 CATAAAATCAAATGGATTTTCAG--ATTTAAATATTTT--ATTACAACCCAGTTCTGATA 21302 |||||| ||||||||||| || || ||||| || | | | ||| || || Sbjct 44319 CATAAAGTCAAATGGATTGGTAGCCATGTAAATCTTGTCGAATCCAAG--AGCAACCATG 44376 Query 21303 ATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCA 21362 | | | ||| || || ||||| || || |||||||| || || | ||||| ||||| | Sbjct 44377 AGA--CGATCAGCAACGAATTCGATGTACTGACACATCAAGGCAGAGTTCATGCCGATGA 44434 Query 21363 ATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTA 21422 || |||||||| | |||||||| || ||| || ||| ||||| | || | Sbjct 44435 GAGCGACGGGAAGAGCATCCGTCAAAAATTCTTGTTCAATGCTGACAGCTTCCAAGATGA 44494 Query 21423 TATTTATTATCCTAGATGTACTAGGGGGAT-ACAATAATTGTTTAAACATCAAACATGCA 21481 ||| | | | | ||||| | | || | || | | ||| | | ||| ||| Sbjct 44495 TATCCTTGACGCGTTCTTGGCTAGGACGCTTACGAAGATGGGT-AAATAAAAGACAAGCA 44553 Query 21482 AAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGC 21541 || ||| ||| | ||||||||| | || || |||||||| ||||| ||||||||| Sbjct 44554 AAGTCAGTATGAAGACCTTCATCACGACAGATCAATTCATTGCTGAATGTCAAACCGGGC 44613 Query 21542 ATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCC 21601 || | || | ||||| | |||||| || || ||||| | || || ||||| || || Sbjct 44614 ATCAGACCACGTTTTTTGAGCCAAAAGATGGAAGCAAAGGAACCAGAGAAGAAGATACCT 44673 Query 21602 TCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCAT 21661 || || |||||||| ||||| | |||||| | | ||| | ||| | |||||| Sbjct 44674 TCGACAGCAGCAAAGGCAACAAGACGTTCAGCAAA---AGAACCGTTAGAGGAAATCCAT 44730 Query 21662 TTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGA 21721 || ||||| | |||||| || |||||| || || |||||||| |||||| Sbjct 44731 TTGAAGGCCCAATCAGCCTTTCTCTTGATACAAGGGATAGTGTCAATAGC--AGAAAAGA 44788 Query 21722 TGAtttttttCATCT---ACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCA 21778 |||| |||| ||| || | || ||| || |||| Sbjct 44789 GCATTTCTTTC-TCTTGGTTGTCTTTGATATAAGTGTCAATCAAAAGACTGTAAGTTTCT 44847 Query 21779 GAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTC-TGAACATTG 21837 | || |||||||| ||| || ||||| || || |||||| | || || ||| ||| Sbjct 44848 GCGTGAATATTTTCAATCATGATTTGAAAGCCATAGAAACATTTAGCTTCAGGAATCTTG 44907 Query 21838 AACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAA 21897 || || | |||| |||| ||||||||||||| || || ||||| | ||||| Sbjct 44908 -ACTTCATCACAAAAGTTTTGAACCAAGTTTTCATTAACAATGCCATCTGAACCAGCAAA 44966 Query 21898 AAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTA---ATTTTTTCCAATC 21954 || ||||| | ||||| | |||||||| || || | |||| |||||| Sbjct 44967 GAAGGCCAAAACGCGAGAGATAAAGAAACGTTCGTTTTCGGTCATCTTGTTTTCCCAATC 45026 Query 21955 TAATAAA--TCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTT 22012 || || || || ||||| | |||||||| |||||||||| ||| ||| || Sbjct 45027 --ATGAAGGTCCTTGCTCAAATCGATTTCTTCAGCTGTCCAAAAGGAAGCTTCAGCTTTC 45084 Query 22013 TTATA 22017 ||||| Sbjct 45085 TTATA 45089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531896843987800