Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F002083735.1_202017-04-12] 595 sequences; 24,077,254 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq80 235 6e-57 >seq80 Length=87281 Score = 235 bits (260), Expect = 6e-57 Identities = 604/908 (67%), Gaps = 30/908 (3%) Strand=Plus/Plus Query 92742 TTAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACA 92801 ||||||||| ||||||| ||||| || ||| || | ||| ||||| |||||| Sbjct 44196 TTAGAAATCAGCATCTAAGGTAAAAGTCTTTTCAGCAGGCTGCTTGTTCATGACACCAGC 44255 Query 92802 TTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGA 92861 ||| || || || ||||||||||| || ||||| |||| | ||| ||| Sbjct 44256 ACGTTGATAATCAGAGACACGCTTTTCAAAGAAGTTGGTCTTGCCTTGAAGAGAGATCAT 44315 Query 92862 ATTCACTA-GTGAT-TGGATTCTTGGCGTTATAATACTTTTCA---CC--GATCAACTCG 92914 | || | || | |||||| | || | ||| ||| || || || |||| Sbjct 44316 GTCCATAAAGTCAAATGGATTGGTAGCCATGTAAATCTTGTCGAATCCAAGAGCAAC--- 44372 Query 92915 TACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCT 92974 || | | |||||| || ||||| ||||||||| ||||||| || | ||||| || Sbjct 44373 --CATGAGACGATCAGCAACGAATTCGATGTACTGACACATCAAGGCAGAGTTCATGCCG 44430 Query 92975 AGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTC 93034 | ||| || || ||||| || ||||| || |||| || || || ||||| Sbjct 44431 ATGAGAGCGACGGGAAGAGCATCCGTCAAAAATTCTTGTTCAATGCTGACAGCTTCCAAG 44490 Query 93035 AAGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCAC 93094 | ||| || | || | | || | | | ||||| | | ||| || || || Sbjct 44491 ATGATATCCTTGACGCGT-TCTTGGCTAGGACGCTTACGA-AGATGGGTAAATAAAAGAC 44548 Query 93095 --GCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAAC 93152 |||||||| ||||| | |||||| || || | ||||| |||||||||||||| |||| Sbjct 44549 AAGCAAAGTCAGTATGAAGACCTTCATCACGACAGATCAATTCATTGCTGAATGTCAAAC 44608 Query 93153 CTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTA 93212 | || | ||| || ||||| ||||||||||| || |||||||| |||||| || || | Sbjct 44609 CGGGCATCAGACCACGTTTTTTGAGCCAAAAGATGGAAGCAAAGGAACCAGAGAAGAAGA 44668 Query 93213 TACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGA 93272 ||||||| || || ||||| || |||| |||||| |||||| || ||| | | Sbjct 44669 TACCTTCGACAGCAGCAAAGGCAACAAGACGTTCAGCAAAAGAACCG---TTAGAGGAAA 44725 Query 93273 TCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAA 93332 ||||||| || |||||||| || ||| |||| |||||||| | || || ||||| || Sbjct 44726 TCCATTTGAAGGCCCAATCAGCCTTTCTCTTGATACAAGGGATAGTGTCAATAGCAGAAA 44785 Query 93333 ATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTT 93392 | || ||| ||| | ||| || || || || || || ||| || ||| Sbjct 44786 AGAGCATTTCTTTCTCTTGGTTGTCTTTGATATAAGTGTCAATCAAAAGACTGTAAGTTT 44845 Query 93393 CAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCT 93452 | | || | ||| || || ||||| || || ||||||||| ||||||| | |||| Sbjct 44846 CTGCGTGAATATTTTCAATCATGATTTGAAAGCCATAGAAACATTTAGCTTCAGGAATCT 44905 Query 93453 GCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaa 93512 ||||| | | |||| | | || | |||||||| || || ||||| || | |||| Sbjct 44906 TGACTTCATCACAAAAGTTTTGAACCAAGTTTTCATTAACAATGCCATCTGAACCAGCAA 44965 Query 93513 aaaaaGCCAATATATGCTTTATA---AAATGT---TTCTC-ATCATCTTTAAGCTTATCC 93565 | || ||||| | | ||| ||| || || || ||||||| || ||| Sbjct 44966 AGAAGGCCAAAACGCGAGAGATAAAGAAACGTTCGTTTTCGGTCATCTT----GTTTTCC 45021 Query 93566 CAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCT 93625 ||||| || || || | ||||| |||||| | |||||||| || ||||| ||| Sbjct 45022 CAATCATGAAGGTCCTTGCTCAAATCGATTTCTTCAGCTGTCCAAAAGGAAGCTTCAGCT 45081 Query 93626 TTTTTGTA 93633 || || || Sbjct 45082 TTCTTATA 45089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556856658347800