Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F002083735.1_202017-04-12] 595 sequences; 24,077,254 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq15 107 3e-18 >seq15 Length=177086 Score = 107 bits (118), Expect = 3e-18 Identities = 143/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 203867 ACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTAC 203926 || ||||| || ||||| ||| |||||||| |||||||| ||||||| ||| | || Sbjct 131491 ACTGCAGGTCTAGATCTCAAATAATACATGCCAGTCTTTAGTCCCTTCTTCCAGGCATAA 131550 Query 203927 ATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGG 203986 | |||||| || | |||||||| | ||| || ||||| | | |||| ||| || Sbjct 131551 AAGTGCATAGAGGTCAGTTTGCCAAAGTTTGGTTCGGCAGTAAACAAATTCATAGATTGA 131610 Query 203987 CTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATAATGGTCTTCTGCGAAAT 204045 |||||| || |||||| || | || |||||||| | ||||| || | || ||||| Sbjct 131611 GATTGGTCAAT-AAAGGCTCCTCTGTCAGCGGCCATGTCAATAATAGTTCTTTGTGAAAT 131669 Query 204046 CTCCCACACCGTCTTG 204061 |||||| || |||||| Sbjct 131670 CTCCCATACTGTCTTG 131685 Score = 105 bits (116), Expect = 1e-17 Identities = 407/633 (64%), Gaps = 6/633 (1%) Strand=Plus/Minus Query 204884 TCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGAC 204943 || || || || || |||| ||| | |||||| | | |||| | ||||| ||| | Sbjct 93397 TCAACAATTTCTGTACACAGGTTGCTGCACTTGATCGTACCCAAGTTTTGCTGATTACTC 93338 Query 204944 TTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGATCGC 205003 || | |||||| | ||||| || | ||||| || | || ||||| | || | | Sbjct 93337 TTTCTGTTACAAGCATCCTTATAGAGTATGAATGGATTACCAGTCTCCGTTTGTGCCTCC 93278 Query 205004 AGAATGTGGGTCCACAATTCGCGAGCCTCCACTTGCTTCACGTACATC--CCTTGAGACT 205061 | |||| ||||| | |||||| | ||| ||| | || || |||| | | Sbjct 93277 AAAATGGCATACCACAGCTTTTGAGCCTTGA-TTGTTTCTC-TAGCTCTTCCTTCACGTT 93220 Query 205062 CGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACATT 205121 |||||||| || || || ||||| || ||| | || || | || ||| || Sbjct 93219 CGTATTTTTCATAGAGAGCAACAAATTCGTCACCCCAGACTTCATGTAATCCAGGAGCTT 93160 Query 205122 TTTTGGGACACATCAGAGACCACATCTG-ATCGTCTTTCACCCTCTCCATAAACAGGTCG 205180 ||||| || | |||||||| ||| | ||||| | || | || ||| || || || Sbjct 93159 CATTGGGGCAAAATAGAGACCA-ATCACCACCGTCTCTGACACGCTGCATGAAAAGATCA 93101 Query 205181 CTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTTT 205240 | ||| || | || ||||||||||| || || ||| |||| | |||| ||| ||| Sbjct 93100 GGAACCCAGAGAGCATAGAACAGATCACGAGCTCTGATTTCGTCTTTACCAAAGTTTTTT 93041 Query 205241 TTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGCG 205300 |||||| | | | |||||| || ||||| || || || ||| || | |||| Sbjct 93040 CGCAAGTCTAAAAAGGTGAAAATGTCTGCATGCCAGGGTTCCAAGTACATTGCGAATGCG 92981 Query 205301 CCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAGC 205360 || || | ||| || || || || || || |||| | | ||||||||| || ||| Sbjct 92980 CCCGGACGCTTATTACCGCCTTGATCGACATAACGAGCCGTATTGTTGAAAACACGGAGC 92921 Query 205361 ATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCCCTC 205420 || |||| | ||||||| | ||||| |||| | ||| || || ||| | Sbjct 92920 ATGGGCAATAATCCGTTGGAGTAACCGTTGGTGCCGGCAATGTATGATCCACTAGCACGA 92861 Query 205421 ACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCACTCTTGC 205480 | |||| ||| | |||||| ||||| | ||||| ||| || || || || Sbjct 92860 ATGTTGTGAATGTTCAAGCCAATACCGCCTGCTGTCTTGGAGATTTGAGCACAGATTTTG 92801 Query 205481 AGAGTGCTGTAGATGCCTGCGATGGAATCGTCC 205513 || || ||||| ||| |||| ||||| ||| Sbjct 92800 AGCGTCTCATAGATACCTTCGATCGAATCTTCC 92768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795149286033200